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Blood, 1 March 2008, Vol. 111, No. 5, pp. 2887-2895.
Prepublished online as a Blood First Edition Paper on November 16, 2007; DOI 10.1182/blood-2007-03-079921.


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NEOPLASIA

Chromatin modifications induced by PML-RAR{alpha} repress critical targets in leukemogenesis as analyzed by ChIP-Chip

Claudia Hoemme1, Abdul Peerzada2, Gerhard Behre2, Yipeng Wang3, Michael McClelland3, Kay Nieselt4, Matthias Zschunke4, Christine Disselhoff1, Shuchi Agrawal1, Fabienne Isken1, Nicola Tidow1, Wolfgang E. Berdel1, Hubert Serve1, and Carsten Müller-Tidow1

1 Department of Medicine, Hematology and Oncology and Interdisciplinary Center for Clinical Research (IZKF), University of Münster, Münster, Germany; 2 Department of Oncology and Hematology, University of Halle, Halle, Germany; 3 Sidney Kimmel Cancer Center, San Diego, CA; and 4 Bioinformatics Institute, University of Tübingen, Tübingen, Germany

The translocation t(15;17) generates the chimeric PML-RAR{alpha} transcription factor that is the initiating event of acute promyelocytic leukemia. A global view of PML-RAR{alpha} transcriptional functions was obtained by genome-wide binding and chromatin modification analyses combined with genome-wide expression data. Chromatin immunoprecipitation (ChIP)–chip experiments identified 372 direct genomic PML-RAR{alpha} targets. A subset of these was confirmed in primary acute promyelocytic leukemia. Direct PML-RAR{alpha} targets include regulators of global transcriptional programs as well as critical regulatory genes for basic cellular functions such as cell-cycle control and apoptosis. PML-RAR{alpha} binding universally led to HDAC1 recruitment, loss of histone H3 acetylation, increased tri-methylation of histone H3 lysine 9, and unexpectedly increased trimethylation of histone H3 lysine 4. The binding of PML-RAR{alpha} to target promoters and the resulting histone modifications resulted in mRNA repression of functionally relevant genes. Taken together, our results reveal that the transcription factor PML-RAR{alpha} regulates key cancer-related genes and pathways by inducing a repressed chromatin formation on its direct genomic target genes.


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