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Blood, 1 October 2009, Vol. 114, No. 14, pp. 3001-3007.
Prepublished online as a Blood First Edition Paper on August 7, 2009; DOI 10.1182/blood-2009-03-211334.


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MYELOID NEOPLASIA

Gene expression profiling of minimally differentiated acute myeloid leukemia: M0 is a distinct entity subdivided by RUNX1 mutation status

Fernando P. G. Silva1, Sigrid M. A. Swagemakers2,3, Claudia Erpelinck-Verschueren4, Bas J. Wouters4, Ruud Delwel4, Harry Vrieling1, Peter van der Spek2, Peter J. M. Valk4, and Micheline Giphart-Gassler1

1 Department of Toxicogenetics, Leiden University Medical Center, Leiden; and Departments of 2 Bioinformatics, 3 Cell Biology & Genetics, and 4 Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands

Minimally differentiated acute myeloid leukemia (AML-M0) is defined by immature morphology and expression of early hematologic markers. By gene expression profiling (GEP) and subsequent unsupervised analysis of 35 AML-M0 samples and 253 previously reported AML cases, we demonstrate that AML-M0 cases express a unique signature that is largely separated from other molecular subtypes. Hematologic transcription regulators such as CEBPA, CEBPD, and ETV6, and the differentiation associated gene MPO appeared strongly down-regulated, in line with the primitive state of this leukemia. AML-M0 frequently carries loss-of-function RUNX1 mutation. Unsupervised analyses revealed a subdivision between AML-M0 cases with and without RUNX1 mutations. RUNX1 mutant AML-M0 samples showed a distinct up-regulation of B cell–related genes such as members of the B-cell receptor complex, transcription regulators RUNX3, ETS2, IRF8, or PRDM1, and major histocompatibility complex class II genes. Importantly, prediction with high accuracy of the AML-M0 subtype and prediction of patients carrying RUNX1 mutation within this subtype were possible based on the expression level of only a few transcripts. We propose that RUNX1 mutations in this AML subgroup cause lineage infidelity, leading to aberrant coexpression of myeloid and B-lymphoid genes. Furthermore, our results imply that AML-M0, although originally determined by morphology, constitutes a leukemia subgroup.


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F. P.G. Silva, I. Almeida, B. Morolli, G. Brouwer-Mandema, H. Wessels, R. Vossen, H. Vrieling, E. W.A. Marijt, P. J.M. Valk, H. C. Kluin-Nelemans, et al.
Genome wide molecular analysis of minimally differentiated acute myeloid leukemia
Haematologica, November 1, 2009; 94(11): 1546 - 1554.
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