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Prepublished online as a Blood First Edition Paper on August 1, 2002; DOI 10.1182/blood-2002-02-0602.
CHEMOKINES
From the Department of Allergy and Immunology and
Department of Molecular Pharmacology, National Research Institute for
Child Health and Development, Tokyo, Japan; Department of
Pharmacology, Gifu Pharmaceutical University, Gifu, Japan;
Department of Veterinary Clinic, Faculty of Agriculture, Tokyo
University of Agriculture and Technology, Tokyo, Japan;
Research Team for Allergy Transcriptome, RIKEN Research Center for
Allergy and Immunology, Yokohama, Japan; Laboratory for
Functional Analysis, RIKEN SNP Research Center, Yokohama,
Japan; Department of Pediatrics, National Sagamihara
Hospital, Sagamihara, Japan.
Rodent mast cells (MCs) are common experimental tools but are
somewhat different from their human counterparts in their responses to
certain cytokines and drugs. We examined the expression of more than
10 000 distinct genes in human and mouse cultured MCs using
high-density oligonucleotide probe arrays to find molecules similarly
regulated and expressed by the 2 MC types. After stimulation via
high-affinity Fc Mast cells (MCs) express the high-affinity
immunoglobin E (IgE) receptor (Fc A draft reading of all human genome sequences has been
completed.4,5 It is expected that in the near future we
will resolve previously unanswered questions, such as the probability
of development of various diseases, by screening for single nucleotide
polymorphisms over the whole genome sequence. Comprehension of the
genome has also accelerated our understanding of the
transcriptome,6 which is the totality of transcripts
present in a cell, and the proteome,7 the proteins present
in specific cell. Recently developed techniques Cytokines and antibodies
Purification of human CD34+ cells
Culture of human MCs from CD34+ cells Human CD34+ cells were suspended in complete Iscove modified Dulbecco medium (IMDM), which consisted of IMDM (Life Technologies, Rockville, MD) supplemented with 1% insulin-transferrin-selenium-A supplement (Life Technologies), 50 µM 2-ME (Life Technologies), 100 units/mL penicillin (Life Technologies), 100 µg/mL streptomycin (Life Technologies), and 0.1% bovine serum albumin (BSA; Sigma, St Louis, MO). CD34+ cells were cultured in the complete IMDM supplemented with 100 ng/mL SCF, 50 ng/mL IL-6, and 2% fetal calf serum (FCS; Cansera, Rexdale, Canada) in 25- or 75-cm2 flasks (Iwaki Glass, Tokyo, Japan) as described elsewhere.10,11,15 After 11 to 14 weeks of culture, the cells (> 99% were tryptase positive) were further treated with IL-3 at 10 ng/mL in addition to the above cytokines for 7 days and then used for transcriptome and cytokine production assay. IL-3 was added after 11 weeks because it stimulates basophil production when added from the beginning of culture19 but prevents the apoptosis of cord blood-derived MCs when added after 10 weeks of culture20 and because mouse MCs require mIL-3. In a preliminary study, IL-3 did not promote functional maturation of IgE-dependent histamine release and granulocyte-macrophage colony-stimulating factor (GM-CSF) production.Activation of human MCs The human MCs were sensitized with 1 µg/mL human myeloma IgE (a generous gift from Dr Kimishige Ishizaka, La Jolla, CA) at 37°C for 48 hours in the presence of IL-4 plus SCF and IL-6. After washing, the cells were suspended in the complete IMDM with the above cytokines. The cells were then challenged with either 1.5 µg/mL rabbit anti-human IgE Ab (Dako, Glostrup, Denmark) or the culture medium alone at 37°C for 6 hours.Culture of WEHI-3 cell line We used conditioned medium from the WEHI-3 cell line (American Type Culture Collection, Rockville, MD) as a source of IL-3. The cells were suspended at 5 × 105 cells/mL and cultured in RPMI 1640 medium (Life Technologies) supplemented with 10% FCS, 10 mM HEPES (N-2-hydroxyethylpiperazine-N'-2-ethanesulfonic acid; Sigma, and 50 µM 2-ME for 72 hours. The supernatant was then collected after centrifuging at 800g for 15 minutes and stored at 40°C after filtration.
Culture of mouse MCs from bone marrow cells BALB/c mice were purchased from Japan SLC (Hamamatsu, Japan). NOA mice (Naruto Research Institute Otsuka Atrichia, Naruto, Japan) were of Japanese fancy-mice origin and are reported to have high susceptibility to development of atopic eczemalike dermatitis.21 All animal experiments were performed under the protocol approved by each institutional review board. Cultured mouse MCs were generated from the femoral bone marrow cells of mice as described previously.14,22 Cells were grown in RPMI 1640 medium supplemented with 10% FCS, 50 µM 2-ME, and 20% WEHI3 cell line-conditioned medium as a source of MC growth factors by replacement of half of the medium weekly. After 4 to 5 weeks of culture, more than 98% of the cells were identifiable as MCs by toluidine blue staining. For some of the experiments, the cells were further cultured with rm SCF at 100 ng/mL in addition to the above medium for 7 days.Activation of mouse MCs Cultured mouse MCs were sensitized overnight with 2 µg/mL mouse monoclonal antidinitrophenol (anti-DNP) IgE Ab (a generous gift from Dr Kimishige Ishizaka) in the above culture medium. After sensitization, the cells were washed twice and suspended at 1 × 106 cells/mL in the culture medium. The cells were challenged with either an optimal concentration (10 ng/mL) of DNP derivatives of bovine serum albumin (DNP-BSA, containing 35 DNP groups per BSA molecule; Calbiochem, La Jolla, CA) or control solution at 37°C for 6 hours. The spleen was obtained as the control tissue for MC-specific genes.GeneChip expression analysis Human genome-wide gene expression was examined by using the Human Genome U95A probe array (GeneChip, Affymetrix), which contains the oligonucleotide probe set for approximately 12 000 full-length genes, according to the manufacturer's protocol (Expression Analysis Technical Manual) and previous reports.10,11 Mouse genome screening was done by using Murine Genome U74A probe array (GeneChip, Affymetrix) containing approximately 6000 full-length genes and 6000 expressed sequence tags (ESTs). Total RNA (3-10 µg) was extracted from approximately 107 cells. Double-stranded cDNA was synthesized by means of a SuperScript Choice system (Life Technologies, Rockville, MD) and a T7-(dT)24 primer (Amersham Pharmacia Biotech, Buckinghamshire, England). The cDNA was subjected to in vitro transcription in the presence of biotinylated nucleoside triphosphates by means of a BioArray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY). The biotinylated cRNA was hybridized with a probe array for 16 hours at 45°C. After washing, the hybridized biotinylated cRNA was stained with streptavidin-phycoerythrin (Molecular Probes, Eugene, OR) and then scanned with an HP Gene Array Scanner (Affymetrix). The fluorescence intensity of each probe was quantified with a computer program, GeneChip Analysis Suite 4.0 (Affymetrix). The expression level of a single mRNA was determined as the average fluorescence intensity among the intensities obtained by 6- to 20-paired (perfect-matched and single nucleotide-mismatched) probes consisting of 18- to 25-mer oligonucleotides. If the intensities of mismatched probes were very high, gene expression was judged to be absent even if a high average fluorescence was obtained with the GeneChip Analysis Suite 4.0 program. The level of gene expression was determined as the average difference (AD) using the GeneChip software. The percentages of the specific AD level versus the mean AD level of 6 probe sets for housekeeping genes ( -actin and glyceraldehyde-3-phosphate dehydrogenase) were then calculated.
ELISA for CC-chemokines Human I-309 (CCL1) was measured by sandwich enzyme-linked immunosorbent assay (ELISA). Ninety-six-well microtitre plates (Nunc-Immuno Module F8 MaxiSorp, Nalge Nunc International, Roskilde, Denmark) were coated with 5 µg/mL of mouse anti-human I-309 mAb (clone no. 35305.11, R&D Systems) in carbonate buffer at 4°C. After overnight incubation the wells were blocked for 2 hours with the blocking solution (Blocking reagent for ELISA, Roche Diagnostics, Mannheim, Germany), and, after washing, 100 µL of samples were allowed to incubate for 18 hours. After incubation, the plates were treated with 100 µL of biotinylated anti-human I-309 Ab (0.3 µg/mL, PeproTech EC) for 3 hours, followed by 100 µL of streptavidin-peroxidase (Life Technologies) for 45 minutes. The plates were developed with the TMB microwell peroxidase substrate system (Kirkegaard & Perry Laboratories, Gaithersburg, MD); the reactions were stopped with 1 M phosphoric acid. Absorbance was measured at 450 nm, and a standard curve was generated by using recombinant I-309 (PeproTech EC). The sensitivity of the assay was 41 pg/mL. Mouse I-309 was also measured by ELISA according to the above method,with some modification. Hamster anti-mouse I-309 (annotated as TCA3) mAb (clone 4B12, BD Pharmingen) and biotinylated anti-mouse I-309 (TCA3) antibody (0.3 µg/mL, R&D Systems) were using the coating and the captured antibodies, respectively. The standard curve was generated by using recombinant I-309 (BD Pharmingen). The sensitivity of the assay was 123 pg/mL. Monocyte chemoattractant protein-1 (MCP-1; CCL2) and macrophage inflammatory protein-1 (MIP-1 ; CCL4) were measured by
ELISA kits purchased from R&D Systems.
Flow cytometric analyses MCs were suspended in phosphate-buffered saline (PBS) containing 1% BSA and 0.1% NaN3. The cells were then incubated with each primary Ab or its irrelevant Ab in the presence of human IgG (ICN Biomedicals, Aurora, OH) for 30 minutes. They were then incubated with either fluorescein isothiocyanate (FITC)- or phycoerythrin-conjugated goat anti-mouse IgG Ab or goat anti-rat IgG Ab for 30 minutes at 4°C in the dark. After washing, the cells were analyzed by fluorescence-activated cell sorter (FACS) and Cell Quest software (Becton Dickinson, San Jose, CA). The mean fluorescence intensities (MFIs) of MCs stained with specific Ab and those stained with control Ab were obtained.Statistical analysis Differences between 2 paired groups were analyzed by the paired Student t test and were considered significant at P < .05. Values are expressed as the mean ± SEM.
Marked increase in CC chemokine transcripts in activated MCs The aim of this study was to compare the gene expression profiles of widely used functionally mature MC types derived from humans and mice. Human cord blood-derived cultured MCs require SCF, IL-6, and IL-4, while mouse MCs require IL-3 for their development and functional maturation.14,15 As much as possible, we tried to compensate for differences in the standard culture conditions. We added IL-3 for human MCs and SCF for mouse MCs in this study, although these cytokines did not have a significant effect on cytokine production in a preliminary study. We did not add IL-4 or IL-6 to the mouse culture system, since they induce apoptosis of mouse MCs23 or development of other cell types, such as mouse dendritic cells.24 After stimulation via Fc RI, 4 common
molecules were found in the 10 most increased human transcripts and
mouse transcripts among approximately 12 000 genes (Table
1). Three of the 4 increased transcripts
were for CC chemokines: I-309 (CCL1), MIP-1 (CCL3), and MIP-1
(CCL4). The other transcript increased in both human and mouse MCs was
for 4-1BB (CD137).
Similar chemokine gene expression profiles of human and mouse MCs Next, we compared gene expression profiles of human MCs and mouse MCs with respect to chemokines, cytokines, and their receptors. As shown in Table 2, remarkable similarities were found in the IgE-dependent transcriptional regulation of CC chemokines between the 2 MC types. Among these similarly regulated chemokines, MCP-1 (CCL2) was highly expressed by activated MCs as well as resting MCs.
Protein expression of CC chemokines and 4-1BB (CD137) by human and mouse MCs We used ELISA to examine whether these chemokines are also increased at the protein level by IgE-dependent stimulation (Figure 1). As expected, the proteins I-309 (CCL1), MCP-1 (CCL2), and MIP-1 (CCL4) were detected in both
cultured human MCs and mouse MCs after cross-linking of Fc RI. The
protein levels of human MCP-1 and MIP-1 released from activated
human MCs were the highest among the cytokines/chemokines we have
tested (GM-CSF, IL-5, IL-8, IL-13, and CCL3;
MIP-1 ).10,15,25 Mouse I-309, MCP-1, and MIP-1 were
also produced at high levels. On the other hand, human I-309 proteins
were produced at relatively low levels, in spite of abundant expression
of their transcripts. We found in a preliminary study that human I-309
was unstable. When we incubated the 2 batches of 106 human
MCs with anti-IgE for 6, 24, and 48 hours, I-309 was found at
13.8ng/3.64ng, 1.89ng/0.95ng, and 1.28ng/0.58ng, respectively. Thus,
I-309 was rapidly degraded during 6 to 24 hours' incubation with MCs
at 37°C. Both human and mouse MCP-1, whose mRNA levels were high in
resting MCs, were detected also as proteins before IgE stimulation,
whereas the 2 other CC chemokine proteins were not detected in the
resting MCs.
The molecule 4-1BB (CD137), recently found to be an important
costimulatory molecule in T cells,26 natural killer (NK)
cells,27 monocytes,28 and
eosinophils,29 was up-regulated in both human and mouse
MCs by Fc
Interspecies comparison of MC-specific transcripts We used GeneChip to find abundant human and mouse MC-specific transcripts. We measured the 12 000 genes and ESTs by comparing the expression levels in MCs and those in mouse spleen cells or human leukocytes (neutrophils, eosinophils, and mononuclear cells). Then we selected abundant MC-specific transcripts, whose signals were more than 10-fold higher than in these control cell types, by sorting them on the bassis of expression levels (Table 3). As previously reported,11 both human and mouse cultured MCs expressed several proteases, such as tryptase, at the highest levels.
We selected orthologous genes (homologous genes in different species
evolving from the same common ancestral gene)30 of cytokines, chemokines, their receptors, CD molecules, housekeeping, mouse MC-specific, and human MC-specific molecules from the 12 000
distinct genes. The pairs of orthologs were selected primarily on the
basis of perfectly coincident annotation. If the annotation was
partially matched, we examined the homology between the 2 MC
transcripts by consulting the UniGene Web site
(http://www.ncbi.nlm.nih.gov/UniGene/) and the Human-Mouse Homology Map
(http://www.ncbi.nlm.nih.gov/Homology/; this map became available
during preparation of this paper).31 Finally, we selected
287 pairs of orthologous genes, as shown in Figure
3. We confirmed that the gene expression
of several CC chemokines, such as I-309 (CCL1), was regulated in a very
similar manner. The names and expression levels of these 287 genes are shown as unreviewed additional material at our Web site
(http://www.nch.go.jp/imal/English_index.htm).
It should be noted that several MC-specific transcripts could not be
compared. Human cells are known to lack a
The aim of this study was to elucidate which molecules are commonly expressed in both SCF- and IL-6-dependent cultured human cord blood-derived MCs and IL-3-dependent cultured mouse bone marrow-derived MCs. Owing to the differences in cytokine dependency, we did not strongly expect to find many molecules expressed in both human and mouse MCs. However, following IgE-dependent activation, 3 CC chemokines and 4-1BB (CD137) were found in the 10 most up-regulated transcripts among approximately 12 000 molecules in both cultured human MCs and cultured mouse MCs. Another CC chemokine, MCP-1 (CCL2), was also highly expressed in both human and mouse MCs in a resting state as well as in an activated state. Mouse MCs have already been reported by many
investigators34-38 to produce a variety of
cytokine/chemokine proteins, including I-309 (CCL1), MCP-1 (CCL2),
MIP-1 The molecule 4-1BB (CD137), recently found to be an important
costimulatory molecule in various immune cell types, 26-29
was up-regulated at transcriptional and protein levels in both human and mouse MCs by Fc Animal models, especially mice, are common surrogates for studying human diseases. However, clinical trials sometimes fail owing to the fact that the results obtained in animal studies cannot be reproduced in humans. For instance, anti-IL-5 antibody completely blocked the airway hypersensitivity in experimental animal models of asthma,51 while the therapeutic application of humanized anti-IL-5 antibody did not improve the bronchial hypersensitivity of asthmatics.52 Recently, many human and mouse orthologous genes have become available at genome-wide level in electronic format (http://www.ncbi.nlm.nih.gov/Homology/), which facilitates interspecies comparisons.31 However, it has not been shown that these structure-based orthologs are similarly regulated. We compared for the first time the expression levels of these orthologous genes by selecting 287 gene pairs. Among the ortholog pairs, the regulation pattern of I-309 (CCL1) turned out to be highly conserved between human and mouse. Thus the targeting of I-309 is an attractive approach for potential clinical applications, since investigation of I-309 in mouse models may be more predictive of the human responses. For other orthologous genes, we found that mRNA levels are regulated differently in mouse and human MCs. Therefore, studies on the function of molecules highly expressed only in mouse cells have to be carefully interpreted with regard to their potential function in humans. Interspecies comparison studies of whole genome expression should be useful for interpretation of experimental data from animal models of human pathogenesis.
We thank Dr Kiyoshi Kawashima, Dr Shigenobu Shoda, and the staff of the Department of Obstetrics, Gyoda Chuo Hospital, for generously providing umbilical cord blood. We also thank Dr Florian Gantner at Bayer Yakuhin for proofreading the manuscript; Dr Shigeru Okumura for discussion; and Mr Hisashi Tomita, Mr Keisuke Yuki, Ms Noriko Hashimoto, and Ms Futaba Sekiya at National Research Institute for Child Health and Development and Ms Atsuko Ikeda at National Sagamihara Hospital for skillful technical assistance.
Submitted February 25, 2002; accepted July 15, 2002.
Prepublished online as Blood First Edition Paper, August 1, 2002; DOI 10.1182/blood-2002-02-0602.
Supported in part by a grant from the Organization for Pharmaceutical Safety and Research and the Ministry of Health, Labour and Welfare (the Millennium Genome Project, MPJ-5) and by a grant from RIKEN Research Center for Allergy and Immunology.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Hirohisa Saito, Department of Allergy and Immunology, National Research Institute for Child Health and Development, 3-35-31 Taishido, Setagaya-ku, Tokyo 154-8567, Japan; e-mail: hsaito{at}nch.go.jp.
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© 2002 by The American Society of Hematology.
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Z. Wiener, P. Pocza, M. Racz, G. Nagy, G. Tolgyesi, V. Molnar, J. Jaeger, E. Buzas, E. Gorbe, Z. Papp, et al. IL-18 induces a marked gene expression profile change and increased Ccl1 (I-309) production in mouse mucosal mast cell homologs Int. Immunol., December 1, 2008; 20(12): 1565 - 1573. [Abstract] [Full Text] [PDF] |
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S. M. Burke, T. B. Issekutz, K. Mohan, P. W. K. Lee, M. Shmulevitz, and J. S. Marshall Human mast cell activation with virus-associated stimuli leads to the selective chemotaxis of natural killer cells by a CXCL8-dependent mechanism Blood, June 15, 2008; 111(12): 5467 - 5476. [Abstract] [Full Text] [PDF] |
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T. Kambayashi, J. D. Baranski, R. G. Baker, T. Zou, E. J. Allenspach, J. E. Shoag, P. L. Jones, and G. A. Koretzky Indirect involvement of allergen-captured mast cells in antigen presentation Blood, February 1, 2008; 111(3): 1489 - 1496. [Abstract] [Full Text] [PDF] |
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J.-A. Gonzalo, Y. Qiu, J. M. Lora, A. Al-Garawi, J.-L. Villeval, J. A. Boyce, C. Martinez-A, G. Marquez, I. Goya, Q. Hamid, et al. Coordinated Involvement of Mast Cells and T Cells in Allergic Mucosal Inflammation: Critical Role of the CC Chemokine Ligand 1:CCR8 Axis J. Immunol., August 1, 2007; 179(3): 1740 - 1750. [Abstract] [Full Text] [PDF] |
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S. Y. Thomas, A. Banerji, B. D. Medoff, C. M. Lilly, and A. D. Luster Multiple Chemokine Receptors, Including CCR6 and CXCR3, Regulate Antigen-Induced T Cell Homing to the Human Asthmatic Airway J. Immunol., August 1, 2007; 179(3): 1901 - 1912. [Abstract] [Full Text] [PDF] |
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T. Kitawaki, N. Kadowaki, N. Sugimoto, N. Kambe, T. Hori, Y. Miyachi, T. Nakahata, and T. Uchiyama IgE-activated mast cells in combination with pro-inflammatory factors induce Th2-promoting dendritic cells Int. Immunol., December 1, 2006; 18(12): 1789 - 1799. [Abstract] [Full Text] [PDF] |
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D. Soler, T. R. Chapman, L. R. Poisson, L. Wang, J. Cote-Sierra, M. Ryan, A. McDonald, S. Badola, E. Fedyk, A. J. Coyle, et al. CCR8 Expression Identifies CD4 Memory T Cells Enriched for FOXP3+ Regulatory and Th2 Effector Lymphocytes J. Immunol., November 15, 2006; 177(10): 6940 - 6951. [Abstract] [Full Text] [PDF] |
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S. Nakae, H. Suto, M. Iikura, M. Kakurai, J. D. Sedgwick, M. Tsai, and S. J. Galli Mast Cells Enhance T Cell Activation: Importance of Mast Cell Costimulatory Molecules and Secreted TNF J. Immunol., February 15, 2006; 176(4): 2238 - 2248. [Abstract] [Full Text] [PDF] |
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T. Nakayama, N. Mutsuga, L. Yao, and G. Tosato Prostaglandin E2 promotes degranulation-independent release of MCP-1 from mast cells J. Leukoc. Biol., January 1, 2006; 79(1): 95 - 104. [Abstract] [Full Text] [PDF] |
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V. Hernandez-Hansen, J. D. J. Bard, C. A. Tarleton, J. A. Wilder, C. A. Lowell, B. S. Wilson, and J. M. Oliver Increased Expression of Genes Linked to Fc{epsilon}RI Signaling and to Cytokine and Chemokine Production in Lyn-Deficient Mast Cells J. Immunol., December 15, 2005; 175(12): 7880 - 7888. [Abstract] [Full Text] [PDF] |
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H. Nishimoto, S.-W. Lee, H. Hong, K. G. Potter, M. Maeda-Yamamoto, T. Kinoshita, Y. Kawakami, R. S. Mittler, B. S. Kwon, C. F. Ware, et al. Costimulation of mast cells by 4-1BB, a member of the tumor necrosis factor receptor superfamily, with the high-affinity IgE receptor Blood, December 15, 2005; 106(13): 4241 - 4248. [Abstract] [Full Text] [PDF] |
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T. Kawakami and J. Kitaura Mast Cell Survival and Activation by IgE in the Absence of Antigen: A Consideration of the Biologic Mechanisms and Relevance J. Immunol., October 1, 2005; 175(7): 4167 - 4173. [Abstract] [Full Text] [PDF] |
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S. Nakae, H. Suto, M. Kakurai, J. D. Sedgwick, M. Tsai, and S. J. Galli Mast cells enhance T cell activation: Importance of mast cell-derived TNF PNAS, May 3, 2005; 102(18): 6467 - 6472. [Abstract] [Full Text] [PDF] |
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J. Kitaura, T. Kinoshita, M. Matsumoto, S. Chung, Y. Kawakami, M. Leitges, D. Wu, C. A. Lowell, and T. Kawakami IgE- and IgE+Ag-mediated mast cell migration in an autocrine/paracrine fashion Blood, April 15, 2005; 105(8): 3222 - 3229. [Abstract] [Full Text] [PDF] |
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J.-i. Kashiwakura, H. Yokoi, H. Saito, and Y. Okayama T Cell Proliferation by Direct Cross-Talk between OX40 Ligand on Human Mast Cells and OX40 on Human T Cells: Comparison of Gene Expression Profiles between Human Tonsillar and Lung-Cultured Mast Cells J. Immunol., October 15, 2004; 173(8): 5247 - 5257. [Abstract] [Full Text] [PDF] |
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B. Slobedman, J. L. Stern, A. L. Cunningham, A. Abendroth, D. A. Abate, and E. S. Mocarski Impact of Human Cytomegalovirus Latent Infection on Myeloid Progenitor Cell Gene Expression J. Virol., April 15, 2004; 78(8): 4054 - 4062. [Abstract] [Full Text] [PDF] |
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S. Okumura, J.-i. Kashiwakura, H. Tomita, K. Matsumoto, T. Nakajima, H. Saito, and Y. Okayama Identification of specific gene expression profiles in human mast cells mediated by Toll-like receptor 4 and Fc{epsilon}RI Blood, October 1, 2003; 102(7): 2547 - 2554. [Abstract] [Full Text] [PDF] |
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