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IMMUNOBIOLOGY
From the Laboratory of Molecular Immunology, Engelhardt
Institute of Molecular Biology, Russian Academy of Sciences, and
Belozersky Institute of Physico-Chemical Biology, Moscow State
University, Moscow, Russia; Department of Molecular Biology, Institute
for Cell Biology, Eberhard-Karls-University Tübingen,
Tübingen, Germany; Regulation of Cell Growth Laboratory, Division
of Basic Sciences, National Cancer Institute Frederick, and Intramural
Research Support Program, Science Applications International
Corporation (SAIC) Frederick and Laboratory of Molecular
Immunoregulation, Division of Basic Sciences, National Cancer Institute
Frederick, Frederick, MD.
The 2 lymphotoxin subunits LT Members of the tumor necrosis factor (TNF) cytokine
family are critically involved in immune responses associated with
inflammation, tissue homeostasis, and innate immunity,1-3
as well as in organogenesis and maintenance of functional lymphoid
tissues.4 Most of the cytokines of this family, consisting
of about 20 members, are type II transmembrane glycoproteins, which can
form homotrimers and heterotrimers.5 Lymphotoxin Much of the current knowledge concerning the functions of LT results
from experiments in the murine system, including knockout and
transgenic mice.4 Mice deficient in LT The link between human LT genes and immunodeficiency was suggested by a
genetic study of a large human family with the inherited IgA deficiency
(IgAD) and common variable immunodeficiency (CVID). The susceptibility
locus for the disease was mapped between major histocompatibility
complex (MHC) class III markers, a region containing 21 identified
genes that include TNF, LTA, and
LTB.20
Based on all these considerations, it is conceivable that in humans the
disruption of LT signaling by pharmacologic agents may dramatically
affect the development of FDC networks and interfere with proper
development of germinal centers, class switch, and antibody response.
Deficient immune responses in humans are consistently observed in
patients undergoing allograft transplantation and subsequent
immunosuppressive treatment with cyclosporin A (CsA).
In this paper we report that LT PBMCs and cell culture
RNA isolation and Northern blotting
Immunoprecipitation and antibodies
Western blotting Transfer to nitrocellulose membranes (Optitran BA-S 85, Schleicher and Schuell, Dassel, Germany) was performed under semidry conditions in transfer buffer (50 mM Tris, 40 mM glycine, 375 mg/L SDS, 20% [vol/vol] MeOH) for 2 hours at 0.8 mA/cm2. Membranes were blocked with 5% (wt/vol) nonfat dry milk in TBST (20 mM Tris-HCl, pH 8.0, 0.9% NaCl, 0.05% [vol/vol] Tween20) for 1 hour. Proteins were incubated with the anti-LT rabbit polyclonal antiserum no.
323623 in 5% (wt/vol) nonfat dry milk/TBST for 12 hours
at 4°C. Membranes were then washed 3 times in TBST for 5 minutes and
incubated for 1 hour with secondary horseradish peroxidase-conjugated
goat anti-rabbit IgG antibody (Amersham, Braunschweig, Germany) in 5%
(wt/vol) nonfat dry milk/TBST and developed with the enhanced
chemiluminescence (ECL) reagents (Amersham).
LT promoter using
MatInspector site prediction program and weight matrices from Transfac
database (http://transfac.gbf.de/) revealed a number of potential
NFAT-binding sites within the proximal 0.7-kb (Figure 4A). The
following double-stranded oligonucleotide probes were synthesized, each
encompassing one of the potential NFAT sites together with the flanking
regions (heterologous sequences at the end of the probes not present in
the promoter are shown in lower case): NFAT3 5'-gaa ttC CCT GAC CCG ACT
CCC TTT CCC AGA; NFAT4 5'-gaa ttC GAT GGG CTG GAA AGT CCG TAT ACT;
NFAT5 5'-gaa ttC CCT TTG TAG AAA ACT TTG GAA GGT; A-NFAT 5'-CTC CTA GGC
CTC AGC CTT TCC TGC CTT TGA CTG AAA; B-NFAT 5'-GGA CAG GGG TAC AAG AGA
AGG AAA TGG GCA AAG AGA; kB 5'-cat gCA ACA GAG GGG ACT TTC CGA GAG Gca
tg; LTAKB 5'-gaa ttG CCC TGG GGG CTT CCC CGG GCC CCA. Probes were
labeled either with [ -32P]dATP (deoxyadenosine
triphosphate) by Klenow fragment (NFAT3-5) or with
[ -32P]dATP by bacteriophage T4 polynucleotide kinase
(A-NFAT and B-NFAT) using standard procedures.25
Nuclear extracts and electrophoretic mobility shift assay For nuclear extract preparation, freshly isolated human PBMCs were collected, washed, and resuspended in RPMI 1640 medium supplemented with 0.5% FBS as described above. Freshly isolated PBMCs (1-3 × 107/mL) were preincubated with 400 nM CsA (or with DMSO as control) for 1 hour. Cells were stimulated with 100 ng/mL PMA and 2 µM ionomycin for 10 or 30 minutes. After treatment cells were washed once with ice-cold PBS, resuspended in 1 mL buffer A (10 mM HEPES [N-2-hydroxyethylpiperazine-N'-2-ethanesulfonic acid], pH 7.9, 10 mM KCl, 0.1 mM EDTA, 0.1 mM EGTA [ethyleneglycoltetraacetic acid], 1 mM DTT [dichlorodiphenyltrichloroethane], 0.5 mM PMSF [phenylmethylsulfonyl fluoride], Complete protease inhibitor cocktail [Boehringer Mannheim]) and incubated on ice for 15 minutes. After adding of 1/15 vol/vol 10% NP-40 and rigorous vortexing, samples were left on ice for 3 minutes and then centrifuged. Nuclei were resuspended in 100 µL buffer C (20 mM HEPES, pH 7.9, 400 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1 mM DTT, 0.5 mM PMSF, Complete protease inhibitor cocktail [Boehringer Mannheim]) and incubated on ice for 10 to 15 minutes. Nuclear extracts were centrifuged, aliquoted, and snap-frozen in liquid nitrogen. Protein concentration of nuclear extracts was determined by Bradford assay and 4 µL of each nuclear extract (approximately 10 µg) was incubated with 20 to 50 fmol labeled probe (10 000-20 000 cpm) in the binding buffer (12.5 mM HEPES, pH 7.8, 6% glycerol, 0.5 mM EDTA, 0.5 mM EGTA, 0.125 µg/µL poly-dIdC (polydeoxyinosinic-deoxycytidylic acid; Sigma) and 3% fetal calf serum [FCS]) in 10 µL total reaction volume for 5 minutes at room temperature. Where indicated, the reaction was further incubated with 0.5 µL polyclonal rabbit anti-NFAT serum no. 79626 or anti-NF B1 serum no. 114127 for 10 minutes at room temperature. Complexes were resolved on a 5% polyacrylamide gel in Tris-borate buffer (45 mM Tris, pH 8.0, 45 mM boric acid, 0.5 mM
EDTA) as previously described.28 The gels were dried and
visualized on Cyclone phosporimaging system (Packard Bioscience, Meriden, CT).
The LT LT gene
can be detected by Northern blot analysis, regardless of CsA pretreatment (Figure 1A, lanes 1 and 2).
In contrast, the LT gene is expressed with significant mRNA levels
in these cells when they were freshly isolated from donor blood (Figure
1A, lane 1; see also Browning et al8 and Millet and
Ruddle29). This level of basal LT expression was
unaffected by treatment of these cells with CsA (Figure 1A, lane 2).
This comparison identifies a distinct difference in the mRNA expression
levels of the 2 LT subunits, LT and LT , in human PBMCs.
Activation of LT mRNA levels
were detected by Northern blot analysis after 4 hours (Figure 1A, lane
3). Prior treatment of the PBMC population with CsA effectively
prevented LT up-regulation by PMA plus ionomycin (lanes 4 and 6). We
then investigated whether the CsA prevented LT induction using
stimuli that mimic physiologic activation of T cells. PBMCs were
activated with anti-CD3 and anti-CD28 monoclonal antibodies via a
T-cell receptor (TCR)-mediated and costimulatory mechanism.
The combination of both signals activated PBMCs considerably more
strongly than either anti-CD3 or anti-CD28 alone (Figure
2, compare lanes 3 and 5 to lane 7). In
this case, CsA treatment reduced the level of CD3/CD28-induced LT
message by at least 80% at both the 5-hour and 9-hour time points
(Figure 2, lanes 7 and 9, and 8 and 10), suggesting that the effects of
CsA on PBMCs may be relevant to the mechanisms acting in vivo.
PMA/ionomycin down-regulates the basal LT are high in freshly prepared PBMCs
(Figure 1A, lane 1). Unexpectedly, this high basal level was
drastically reduced on treatment of cells with PMA plus ionomycin for 4 or 8 hours (Figure 1A, lanes 3 and 5, approximately 3 times and 5 times
reduction, respectively, compared with lane 1), but not by incubation
in cultural medium without activation (data not shown). Additional
treatment with CsA had no effect on this down-regulation by
PMA/ionomycin (lanes 4 and 6). Thus, the 2 genes, LT and LT , have
distinct patterns of regulation. In contrast to LT transcription, PMA/ionomycin treatment resulted in down-regulation of LT
transcripts in PBMCs.
CsA inhibits induced LT was
used for the immunoprecipitations using whole cell lysates. The protein secretion inhibitor Brefeldin A was used during cell activation to
block LT protein secretion. Precipitates subjected to Western analysis revealed that LT protein levels paralleled mRNA levels (compare Figure 1A and Figure 3). No
LT expression was seen in untreated PBMCs, whereas treatment with
PMA/ionomycin induced LT protein expression (Figure 3, lanes 5 and
7). As for mRNA, LT protein induction by PMA/ionomycin was almost
completely blocked by CsA (Figure 3, lanes 6 and 8).
Immunoprecipitation of LT protein from PBMC extracts revealed
constant LT protein levels not sensitive to PMA/ionomycin or CsA
(data not shown).
We concluded from these expression measurements that the 2 components
of the surface LT complex in PBMCs, LT Identification of a novel NFAT site in human LT gene
using MatInspector site prediction program.30 Five regions
within the proximal 700 nucleotides proximal to the transcription start
matched consensus binding sequence for NFAT (Figure
4A), the most likely candidate for the
downstream target of CsA effects (for a review, see Kiani et
al31). In addition, our analysis pointed to an NF B site
90 nucleotides upstream of the transcription start, which we termed
LTAKB (Figure 4A). Binding of NF B proteins is sensitive to
CsA,32,33 and the role of this particular NF B binding
sequence in LT transcriptional activation in T-cell lines in
response to LT 3 or to human T-cell lymphotropic
virus (HTLV) tax has been reported
previously.34-37
Binding assays using nuclear extracts from PBMCs treated with PMA/ionomycin with or without CsA revealed characteristic NFAT binding to a distinct NFAT site, termed NFAT4 and located 490 nucleotides upstream of the transcription start site (Figure 4B, lanes 7, 8, and 11-15). The specificity of the binding was confirmed by disruption of binding by specific antiserum (Figure 4B, lanes 14 and 15) and by competition with nonlabeled probe (data not shown). None of the other 4 sites identified by computer analysis demonstrated any detectable specific binding (Figure 4B, lanes 1-6, 9, 10, and data not shown). Importantly, binding to NFAT4 site was inducible by PMA/ionomycin and at least 80% of this binding could be inhibited by CsA (Figure 4B, lanes 7, 8, and 11-13). No detectable NF Our data strongly suggest that the previously unrecognized NFAT-binding
element in human LT
In this study we addressed 2 previously unresolved issues regarding the regulation of LT components in primary human cells: (1) whether in primary human blood cells the expression of either of the 2 components was sensitive to the action of the immunosuppressant CsA and (2) whether these 2 components are regulated concordantly. The molecular mechanisms of CsA immunosuppressive effects have been
elucidated and largely attributed to inhibition of the phosphatase
calcineurin,38 which regulates, among other targets, the
transcription factor NFAT.39 CsA suppresses the activity of many genes,40 including 3 members of the TNF family,
TNF First of all, we found that expression of LT Contrary to LT To evaluate the physiologic relevance of our initial finding concerning
activated LT The promoter regions of the LTA and LTB genes
have been previously characterized35,46-49 and both are
known to contain functional NF Previous studies of LT Another potential mechanism may act at the posttranscriptional level
through the AU-rich motif found in the 3' untranslated regions (UTRs)
of many short-lived mRNAs.46,52,53 This motif is present
in the 3'-UTRs of the TNFA and LTA genes but is lacking in
the LTB gene.8,29,54 It was reported that CsA
can destabilize IL-3 mRNA acting through the AU-rich motif from the
IL-3 3'-UTR52 by unknown mechanism, but presumably by
regulating expression of AU-RNA-binding proteins. It is conceivable
that in addition to the effects on transcriptional initiation, CsA may
contribute to down-regulation of LT In conclusion, our data on the CsA sensitivity of LT
We are grateful to Drs J. Browning (Biogen, Cambridge, MA) and U. Christians (Institute for Pharmacology, Hannover Medical School) for generous gift of reagents. We thank Drs J. J. Oppenheim, W. J. Murphy (NCI Frederick), H.-G. Rammensee (University of Tübingen), B. Ryffel (CNRI, Orleans, France), and M. A. Lagarkova (Moscow State University) for critically reading this manuscript.
Submitted April 10, 2001; accepted April 5, 2002.
Supported by the VW Foundation (Hanover, Germany). This project has been funded in part with federal funds from the National Cancer Institute, National Institutes of Health (contract no. N01-CO-124000) and by Russian State Program "Human Genome." S.A.N. is an International Research Scholar of the Howard Hughes Research Institute.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Sergei Nedospasov, Engelhardt Institute of Molecular Biology, 32 Vavilov St, 119991, Moscow, Russia; e-mail: snedos{at}online.ru.
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