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Prepublished online as a Blood First Edition Paper on November 14, 2002; DOI 10.1182/blood-2002-08-2446.
NEOPLASIA
From the Erasmus MC/University Medical Center
Rotterdam/Sophia Children's Hospital, Division of Pediatric
Oncology/Hematology, Rotterdam, the Netherlands; Erasmus
MC/University Medical Center Rotterdam, Department of Clinical
Genetics, Rotterdam, the Netherlands; Dutch Childhood
Leukemia Study Group, The Hague, the Netherlands;
Cooperative ALL (COALL) Study Group, Hamburg, Germany; and
Erasmus MC/University Medical Center Rotterdam, Department of Cell
Biology and Genetics, Rotterdam, the Netherlands.
The (12;21) translocation resulting in TEL/AML1 gene
fusion is present in about 25% of childhood precursor B-lineage acute lymphoblastic leukemia (ALL) and is associated with a good prognosis and a high cellular sensitivity to L-asparaginase
(L-Asp). ALL cells are thought to be sensitive to
L-Asp due to lower asparagine synthetase (AS) levels.
Resistance to L-Asp may be caused by an elevated cellular
level of AS or by the ability of resistant cells to rapidly induce the
expression of the AS gene on L-Asp exposure. AS may be a target regulated by t(12;21). We studied the
relationship between t(12;21) and the mRNA level of AS to
investigate a possible mechanism underlying L-Asp
sensitivity. Real-time quantitative reverse transcription-polymerase
chain reaction (RT-PCR) analysis surprisingly revealed that 30 patients
positive for t(12;21) expressed 5-fold more AS mRNA
compared with 17 patients negative for t(12;21) (P = .008) and 11 samples from healthy controls
(P = .016). The mRNA levels of AS between
t(12;21) The t(12;21) occurs in about 25% of
childhood acute lymphoblastic leukemia (ALL) and is restricted to
precursor B cell-lineage leukemia. The t(12;21) involves fusion of the
TEL(ETV6) gene at 12p13 with the AML1(RUNX1) gene
at 21q22. The TEL gene is a member of the Ets family of
transcription factors and functions as a sequence-specific DNA-binding
transcription regulator.1 AML1 encodes a
transcription factor that binds the enhancer core sequence, TGTGGT.2 The DNA-binding affinity of AML1 is increased
through heterodimerization with the core-binding factor (CBF) t(12;21)+ ALL has a relatively favorable
outcome,3-9 which might be related to the finding that
this type of ALL is significantly more sensitive in vitro to
L-asparaginase (L-Asp).10
L-Asp is an enzyme-derived drug widely used in
chemotherapeutic protocols for treatment of children with ALL. In vitro
resistance to L-Asp is correlated with a relative poor
prognosis in vivo.11,12 The proposed mechanism of action
of L-Asp is the depletion of asparagine and glutamine in
the blood leading to cellular efflux and depletion of these amino acids
within cells.13 ALL cells are thought to be particularly
sensitive to L-Asp treatment because of a relative low
capacity to synthesize sufficient asparagine due to intrinsic lower
asparagine synthetase (AS) levels.14,15 Resistance to
L-Asp is suggested to be caused by an elevated cellular level of AS or by the ability of resistant cells to rapidly induce the
expression of the AS gene on L-Asp
exposure.16
The enhancer core sequence of AML1 is required for the transcription of
several hematopoietic-specific genes, including the T-cell receptor Patient samples
FISH analysis
In vitro L-Asp cytotoxicity assay In vitro L-Asp cytotoxicity was determined using the 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazoliumbromide (MTT) assay as described previously.20 Briefly, 100-µL aliquots of cell suspension (1.6 × 105 cells) were cultured in round-bottomed 96-well microtiter plates in the presence of 6 different concentrations of L-Asp (Paronal, Christiaens BV, Breda, The Netherlands) ranging from 0.0032 to 10 IU/mL in duplicate. Control cells were cultured without L-Asp. After incubating the plates for 4 days at 37°C in humidified air containing 5% CO2, 10 µL MTT (5 mg/mL; Sigma Aldrich, Zwijndrecht, The Netherlands) was added and the plates were incubated for an additional 6 hours under the same conditions. During this final 6-hour incubation, the yellow MTT tetrazolium salt is reduced to purple-blue formazan crystals by viable cells only. The formazan crystals were dissolved by adding 100 µL acidified isopropanol (0.04 N HCl-isopropyl alcohol) and the optical density (OD), which is linearly related to the number of viable cells,21 was measured spectrophotometrically at 562 nm. After subtraction of blank values, the leukemic cell survival (LCS) was calculated by the equation LCS = (ODday4 treated well/mean ODday4 control wells) × 100%.Drug sensitivity was assessed by the LC50, the drug concentration lethal to 50% of the cells. Evaluable assay results were obtained when a minimum of 70% leukemic cells was present in the control wells after 4 days of incubation and when the control OD was 0.050 or higher.20 RNA extraction and cDNA synthesis Total cellular RNA was extracted from a minimum of 5 × 106 ( 90% leukemic) cells using Trizol reagent
(Life Technologies) according to the manufacturer's protocol, with
minor modifications. An additional phenol-chloroform extraction was
performed and the isopropanol precipitation at 20°C was facilitated
by adding 1 µL (20 µg/mL) glycogen (Roche, Almere, The
Netherlands). After precipitation with isopropanol, RNA pellets were
dissolved in 20 µL RNAse-free TE buffer consisting of 10 mM Tris
(tris(hydroxymethyl)aminomethane)-HCl and 1 mM EDTA
(ethylenediaminetetraacetic acid) at pH 8.0. The concentration
of RNA was quantitated spectrophotometrically. Following a denaturation
step of 5 minutes at 70°C, 1 µg RNA was reversely transcribed into
single-stranded cDNA. The reverse transcription (RT) reaction was
performed in a total volume of 25 µL containing 0.2 mM random
hexamers and 0.2 mM oligo dT primers (Amersham Pharmacia Biotech,
Piscataway, NJ), 200 U Moloney murine leukemia virus reverse
transcriptase (Promega, Madison, WI), and 25 U RNAsin (Promega) and was
incubated at 37°C for 30 minutes, 42°C for 15 minutes, and 94°C
for 5 minutes. The obtained cDNA was diluted to a final concentration
of 8 ng/µL and stored at 80°C.
Real-time quantitative PCR The mRNA expression levels of AS and an endogenous housekeeping gene encoding for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as a reference were quantified using real-time polymerase chain reaction (PCR) analysis (TaqMan chemistry) on an ABI Prism 7700 sequence detection system (PE Applied Biosystems, Foster City, CA). Amplification of specific PCR products was detected using dual-fluorescent nonextendable probes (hybridizing in between primer pairs) labeled with 6-carboxyfluorescein (FAM) at the 5' end and 6-carboxytetramethylrhodamine (TAMRA) at the 3' end. The primers and probe combinations (Table 1) were designed using OLIGO 6.22 software (Molecular Biology Insights, Cascade, CO) and purchased from Eurogentec (Seraing, Belgium). All primers had a melting temperature (Tm; nearest neighbor method) of 65 ± 1°C. Both internal probes had a Tm of 75 ± 1°C. All PCRs performed with comparable efficiencies of 95% or higher. The real-time quantitative PCR was performed in a total reaction volume of 50 µL containing 1 times TaqMan buffer A (Applied Biosystems), 4 mM MgCl2, 200 µM of each deoxyribonucleoside triphosphate (dNTP), 300 nM forward and reverse primer, 50 nM dual-labeled fluorogenic internal probe, 1.25 U AmpliTaq gold DNA polymerase, and 40 ng cDNA template, in a MicroAmp optical 96-well plate covered with optical adhesive covers (Applied Biosystems). Samples were heated for 10 minutes at 95°C and amplified for 40 cycles of 15 seconds at 95°C and 60 seconds at 60°C. A serial dilution of cDNA derived from a cell line RNA pool (CEM, K562, and 2 Epstein-Barr virus [EBV]-transformed lymphoblastoid B-cell lines) in dH2O was amplified in parallel to verify the amplification efficiency within each experiment. Because all PCRs were performed with equal efficiencies, relative mRNA expression levels of AS for each patient can directly be normalized for input RNA using GAPDH expression of the patient. The relative mRNA expression level of the target gene in each patient was calculated using the comparative cycle time (Ct) method.22 Briefly, the target PCR Ct values, that is, the cycle number at which emitted fluorescence exceeds the 10 × SD of baseline emissions as measured from cycles 3 to 12, is normalized by subtracting the GAPDH Ct value from the target PCR Ct value, which gives the Ct value. From this Ct value,
the relative expression level to GAPDH for each target PCR
can be calculated using the following equation:
Relative mRNA expression = 2 Up-regulation of AS expression levels after in vitro L-Asp exposure Leukemic samples with a purity of at least 90% leukemic cells were exposed to 0 IU/mL (control), 0.4 IU/mL, and 10 IU/mL L-Asp (Paronal, Christiaens BV) for 0, 18, and 42 hours. A total of 10 × 106 cells suspended in a concentration of 2.0 × 106 cells/mL in culture medium for each concentration and time point was placed into culture flasks. After 18 and 42 hours of incubation, the samples still contained at least 90% leukemic cells. For RNA extraction, cells were lysed in Trizol reagent (Life Technologies) and stored at 80°C.
Statistics Differences in mRNA expression between 2 groups were analyzed using the Mann-Whitney U test. The correlation between mRNA expression of AS and L-Asp sensitivity were calculated using the Spearman rank correlation test. Statistical tests were performed at a 2-tailed significance level of .05.
Leukemic cells from a group of 82 children with the t(12;21) were
compared with leukemic samples of 40 t(12;21)
Expression of AS mRNA in t(12;21)+ ALL was also
significantly greater than in 11 healthy controls
(P = .019; Figure 1). No difference in mRNA expression of
AS between t(12;21) The t(12;21)+ ALL group could be divided into 3 subgroups based on sensitivity to L-Asp using previously
reported cutoff points.11,23 From 14 sensitive, 10 intermediate sensitive, and 6 resistant patients the mRNA expression of
AS did not differ (Figure 2). Neither the
total ALL group, including both t(12;21)+ and
t(12;21)
Hypothetically, t(12;21)+ ALL cells may be sensitive to
L-Asp due to a defective capacity to up-regulate AS after
L-Asp exposure. Therefore, samples from 3 t(12;21)+ and 4 t(12;21)
Based largely on in vitro observations in nonhuman leukemia cell lines, it has been hypothesized that elevated AS activity is a cause of resistance to L-Asp in human leukemia cells.16,24-28 In the present study, we analyzed a potential mechanism of L-Asp sensitivity in t(12;21)+ childhood ALL, speculating that TEL/AML1 represses the transcription of the AS gene. So far, only one study directly correlated AS expression and L-Asp resistance in primary human leukemia cells. In 1969, Haskell and Canellos reported higher AS enzymatic activity in 5 patients with L-Asp-resistant leukemia compared with 4 drug-sensitive patients during or after treatment.29 However, besides the highly limited number of patients, the criteria used to determine whether the patient was resistant or sensitive to L-Asp were not described in the paper. In addition, this study was performed in a heterogeneous group including adult patients with either acute or chronic leukemia. In 2000, Dübbers et al30 reported a lower AS activity in pediatric B-lineage ALL and acute myelogenous leukemia (AML)-M5 compared with T-lineage ALL and other AML subgroups. However, the B-lineage ALL group showed a large heterogeneity in enzyme activity. In the study presented here, the t(12;21)+ ALL group
was matched with a t(12;21) It could be argued that the mRNA expression level of AS does not relate to the protein level and enzyme activity. However, Hutson et al28 showed on human leukemia cell lines that complete amino acid deprivation resulted in a concerted increase in AS mRNA, protein, and enzymatic activity, suggesting that mRNA levels correspond to AS protein levels. L-Asp is an effective drug for newly diagnosed ALL. The effectiveness of this drug results from a rapid and complete depletion of cellular asparagine.13 It was postulated years ago that leukemic cells depend on the external availability of the amino acid asparagine because of absence of endogenous AS.14,15 Asparagine deficiency impairs protein synthesis and leads to a cessation of RNA or DNA synthesis, resulting in cell death. In our study, however, we found no difference in AS mRNA expression between ALL and normal bone marrow or peripheral blood cells. This contradicts the general thought that leukemic cells specifically lack AS compared with normal bone marrow and peripheral blood cells. In a small sample of patients we showed that leukemic cells from
patients with or without the t(12;21) and resistant or sensitive to
L-Asp do not differ in their capacity to up-regulate AS on in vitro exposure to L-Asp, suggesting that resistance to
L-Asp is not caused by rapid induction of AS expression on
L-Asp exposure.17 However, these findings need
to be confirmed in a larger series of patients. The only difference we
did find is a higher basal expression of AS in t(12;21)+
ALL compared with t(12;21) The clinical role of L-Asp in t(12;21)+ ALL is a subject of discussion. Although most studies associate t(12;21) with a good prognosis, conflicting results are described.3,4,8,9,31-33 These conflicting data might be due to differences in use of L-Asp in the treatment protocols because t(12;21)+ ALL is highly sensitive to L-Asp10 and L-Asp-sensitive patients have a more favorable outcome.11 The Dana-Farber Cancer Institute (DFCI) group showed a highly favorable outcome of t(12;21)+ ALL.3 In the DFCI protocol, a high-dose L-Asp is used compared with other treatment protocols. However, it is possible that a general intensification of therapy, not only by L-Asp but also by other drugs, might contribute to the fact that in some recent protocols t(12;21) has a favorable outcome. This has, for instance, been shown by a Japanese study, which reported no prognostic value for the presence of t(12;21) in an early study; however, with intensified therapy in a newer protocol the t(12;21)+ patients did exceedingly well.33 Summarizing, t(12;21)+ ALL, which in vitro is
significantly more sensitive to L-Asp, has a significantly
higher AS mRNA expression level compared with t(12;21) In conclusion, the mechanism of L-Asp sensitivity in t(12;21)+ ALL is not related to AS expression and remains still unclear. Moreover, the present data clearly contradict an almost 35-year-old theory that the therapeutic benefit of L-Asp in leukemia is based on the fact that leukemic cells lack sufficient AS compared with normal cells.
We wish to express our gratitude to the members of the DCLSG and the German COALL study group for their support to this study by providing leukemic samples.
Submitted August 9, 2002; accepted October 31, 2002.
Prepublished online as Blood First Edition Paper, November 14, 2002; DOI 10.1182/blood-2002-08-2446.
Supported by a grant from the Sophia Foundation for Medical Research (SSWO grant 309).
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Wendy A.G. Stams, Erasmus MC/University Medical Center Rotterdam/Sophia Children's Hospital, Division of Pediatric Oncology/ Hematology, Dr Molewaterplein 60 3015 GJ Rotterdam, the Netherlands; e-mail: stams{at}kgk.fgg.eur.nl.
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© 2003 by The American Society of Hematology.
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