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Blood, 15 March 2004, Vol. 103, No. 6, pp. 2088-2095. Prepublished online as a Blood First Edition Paper on November 26, 2003; DOI 10.1182/blood-2003-07-2392.
HEMOSTASIS, THROMBOSIS, AND VASCULAR BIOLOGY Differential proteome analysis of TRAP-activated platelets: involvement of DOK-2 and phosphorylation of RGS proteinsFrom the Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, United Kingdom; Department of Pharmacology, University of Oxford, Oxford, United Kingdom; Division of Medical Sciences, The Medical School, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
We have applied a proteomics approach to analyze signaling cascades in human platelets stimulated by thrombin receptor activating peptide (TRAP). By analyzing basal and TRAP-activated platelets using 2-dimensional gel electrophoresis (2-DE), we detected 62 differentially regulated protein features. From these, 41 could be identified by liquid chromatography–coupled tandem mass spectrometry (LC-MS/MS) and were found to derive from 31 different genes, 8 of which had not previously been reported in platelets, including the adapter downstream of tyrosine kinase 2 (Dok-2). Further studies revealed that the change in mobility of Dok-2 was brought about by tyrosine phosphorylation. Dok-2 tyrosine phosphorylation was also found to be involved in collagen receptor, glycoprotein VI (GPVI), signaling as well as in outside-in signaling through the major platelet integrin,  IIb 3. These studies also provided the first demonstration of posttranslational modification of 2 regulator of G protein signaling (RGS) proteins, RGS10 and 18. Phosphorylation of RGS18 was mapped to Ser49 by MS/MS analysis. This study provides a new approach for the identification of novel signaling molecules in activated platelets, providing new insights into the mechanisms of platelet activation and building the basis for the development of therapeutic agents for thrombotic diseases.
Platelets are enucleated cells that circulate in the blood playing a key role in the control of bleeding. Under pathologic circumstances, platelets are involved in the generation of thrombotic disorders and in development of heart disease.1 Thrombin is one of the most powerful platelet-activating agents.2 Thrombin activation in human platelets is mediated by the proteinase-activated receptors, PAR-1 and PAR-4, which belong to a family of G protein–coupled receptors (GPC-R).3-5 PAR-1 plays the predominant role.6 Cleavage of PAR-1 by -thrombin yields a new amino terminus with the initial sequence SFLLRN, which serves as an agonist. This peptide sequence, termed thrombin receptor-activating peptide (TRAP), is also able to activate the noncleaved receptor and replace thrombin in in vitro experiments allowing for controlled cell stimulation.2,7,8 Signaling by PAR-1 has been extensively studied.7,9,10 However, a full picture of all of the signaling molecules in the PAR-1 pathway is not available. This information is important to fully understand the events underlying platelet activation by PAR-1 and for identification of potential drug targets and future therapeutic modulation of platelet activation processes. In order to gain a better insight into the signaling events following PAR-1 receptor stimulation, we analyzed the proteome of platelets activated by TRAP and compared it with that of unstimulated platelets. Such proteome analysis involves the separation and characterization of hundreds to thousands of proteins at a time. The strategy is based on the key technologies of 2-dimensional gel electrophoresis (2-DE) and liquid chromatography (LC) followed by mass spectrometric (MS) protein analysis.11-13 This approach of directly analyzing the proteins involved and their posttranslational modifications is very powerful for the dissection of signaling events in platelets. Building on our extensive experience with the platelet proteome14,15 and using narrow isoelectric point (pI) range 2-DE gel electrophoresis for differential proteome analysis, we report here the identification of new proteins and signaling events in platelets triggered by PAR-1 receptor stimulation.
Reagents and suppliers
TRAP was purchased from Bachem (Torrance, CA). Purified convulxin, isolated from the venom of Crotalus durissus terrificus as described,16 was a gift from Drs M. Leduc and C. Bon (Unite des Venens, Institut Pasteur, Paris, France). Collagen (Horm) was purchased from Nycomed (Munich, Germany). Thrombin was purchased from Sigma (Poole, Dorset, United Kingdom). Lotrafiban was supplied by GlaxoSmithKline (King of Prussia, PA). The Platelet preparation and activation with TRAP
Fresh blood was collected from healthy volunteers who had not been on medication for the previous 10 days. Ethical approval for this study was granted by the Central Oxford Research Ethics Committee (No:00.231). Each blood sample was processed individually and mixed with a 4% (wt/vol) sodium citrate stock solution (Sigma) to a final concentration of 10% (vol/vol) of the anticoagulant. Platelet isolation was carried out as described previously.14 Resulting platelet pellets were resuspended in Tyrodes-HEPES (134 mM NaCl, 0.34 mM Na2HPO4, 2.9 mM KCl, 12 mM NaHCO3, 20 mM HEPES [N-2-hydroxyethylpiperazine-N'-2-ethanesulfonic acid], 5 mM glucose, 1 mM MgCl2, 1 mM EGTA [ethylene glycol tetraacetic acid], pH 7.3) at 1 x 109 platelets/mL and incubated at room temperature for 30 minutes. In a limited study involving aggregation, EGTA was omitted or the Mice platelets were isolated and resuspended in Tyrodes-HEPES as previously described.18 Two-dimensional gel electrophoresis Proteins were extracted from frozen platelet suspensions, taking care to minimize protein degradation. All reagents were chilled to 4°C and extraction was carried out on ice. Five microliters of a phosphatase inhibitor cocktail (consisting of equal quantities of 100 mM sodium fluoride, 1 M sodium orthovanadate, and 1 M benzamidine) and 20 µL of protease inhibitor cocktail (Sigma, St Louis, MO) were added to each 1-mL platelet sample. Five hundred microliters of 60% (wt/vol) trichloroacetic acid (TCA) in acetone was then added and the sample sonicated briefly until it was completely melted (30 seconds on an 80% duty cycle at 25% power; Status 70 MS73 with SH70G tip; Philip Harris Scientific; Ashby-de-la-Zouch, Leicestershire, UK). The sample was left on ice for 45 minutes, centrifuged at 10 000g for 2 minutes, and the supernatant was discarded. Protein pellets were then washed twice with acetone. For pI 4-7 2-DE gels, pellets were resuspended in 375 µL sample buffer (5 M urea, 2 M thiourea, 2 mM tributyl-phosphine, 65 mM dithiothreitol [DTT], 65 mM CHAPS [3-[(3-cholamidopropyl)dimethylammonio]-1-propane-sulfonic acid], 0.15 M dimethylbenzene ammonium propane sulfonate (NDSB) 256, 1 mM sodium vanadate, 1 mM sodium fluoride, 1 mM benzamidine). For pI 6-11 2-DE gels, protein pellets were resuspended in 500 µL of same sample buffer containing 10% isopropanol. Ampholytes (Servalyte 4-7 and 6-11) were added to the sample to a final concentration of 1.5% (vol/vol). The 2-DE gel electrophoresis was carried out as described previously.14 Following electrophoresis, the gels were fixed in 40% (vol/vol) ethanol:10% (vol/vol) acetic acid and stained with the fluorescent dye OGT MP17 (Oxford GlycoSciences, Abingdon, UK) on the basis of Hassner et al.19 Sixteen-bit monochrome fluorescence images were obtained at 200 µm resolution by scanning gels with an Apollo II linear fluorescence scanner (Oxford GlycoSciences). Differential image analysis Scanned images were processed with a custom version of MELANIE II (Bio-Rad Laboratories Ltd, Hemel Hempstead, United Kingdom). Four pI 4-7 gels and 4 pI 6-11 gels were prepared in independent experiments for both basal and TRAP-activated platelets. Internal calibration of the 2-DE gel images with regard to pI and molecular weight was carried out as described previously.14
For differential image analysis, 2 synthetic gel images, one for each of the 2 applied analytical pI ranges of 4-7 and 6-11, were generated by means of accurate spot matching. These synthetic images contained all protein features detected in basal and stimulated platelets. Only features present in at least 3 of 4 individual gels belonging to either the basal or TRAP group were considered for differential analysis. Intensity (optical density) was measured by summing pixels within each spot boundary (spot volume) and recorded as a percentage of the total spot intensity of the gel: %V = spot volume/ In-gel digestion and peptide extraction Protein features chosen for mass spectrometric analysis were excised from the gels by a software-driven robotic cutter (Oxford Glycosciences, Abingdon, United Kingdom). The recovered gel pieces were dried in a speed-vac. In-gel digestion with trypsin and peptide extraction were carried out by the automated DigestPro workstation (Abimed, Langenfeld, Germany) according to the protocol of Shevchenko et al.20 The combined fractions were lyophilized and dissolved in 0.1% (vol/vol) formic acid. Mass spectrometric analysis Mass spectrometric analysis was carried out using Q-TOF (Micromass, Manchester, United Kingdom) coupled with CapLC (Waters, Milford, MA). The tryptic peptides were loaded and desalted on a 300 µm internal diameter/5 mm length C18 PepMap column (LC Packings, San Francisco, CA). The peptide mixture was eluted with 80% to 95% acetonitrile containing 0.1% formic acid over 20 minutes at a flow rate of 200 nL/minute. Mass data acquisitions were piloted by Masslynx software (Micromass) using automatic switching between MS and coupled tandem mass spectrometry (MS/MS) modes. The survey scan (1s) was obtained over the mass range of m/z 300 to 1200 in the positive ion mode with a cone voltage of 40 V. When the signal reached a user-defined threshold (10 counts/s), peptide precursor ions could be selected for MS/MS scan (2s) over the mass range m/z 50-2000. Fragmentation was performed using argon as the collision gas and with a collision energy profile (20-40 eV) optimized for various mass ranges of precursor ions. The selected precursor ions were automatically included in the exclusion list. The database search was performed with the MASCOT search tool (Matrix Science, London, United Kingdom) screening SWISS-PROT restricted to human taxonomy. Immunoprecipitation and Western blotting
Basal and TRAP-stimulated platelets (8 x 108/mL, 500 µL) were lysed by adding an equal volume of ice-cold 2x lysis buffer (2% [vol/vol] nonidet P-40 [NP-40], 20 mM Tris, 300 mM NaCl, 10 mM EDTA [ethylenediaminetetraacetic acid], 1 mM [4-(2-aminoethyl)–benzenesulfonyl fluoride (ABSF)], 2 mM Na3VO4, 10 µg/mL leupeptin, 10 µg/mL aprotinin, and 1 µg/mL pepstatin A, pH 7.3). Alternatively, washed platelets (5 x 108/mL), in the presence or absence of lotrafiban (10 µM), were stimulated with thrombin (1.0 U/mL, for 90 s), convulxin (3 µg/mL, for 2 minutes), or Horm collagen (10 µg/mL, for 2.5 minutes) prior to addition of equal volume of 2x lysis buffer. Washed murine platelets obtained from wild-type (C57BL/6) or Proteins were separated by SDS–polyacrylamide gel electrophoresis (SDS-PAGE) on 10% gels and transferred on to polyvinylidene fluoride (PVDF) membranes. The membranes were blocked in 10% bovine serum albumin (BSA): TBS-T (wt/vol) overnight at 4°C. The blots were then incubated for 2 hours at room temperature using as primary antibodies either rabbit anti–Dok-2 (1:200) or mouse antiphosphotyrosine monoclonal antibody (mAb; 4G10; 1:1000). Following washes in TBS-T, the blots were incubated for 1 hour with horseradish peroxidase–labeled antirabbit or antimouse polyclonal antibody (1:10 000), respectively. Membranes were washed again and developed using an enhanced-chemiluminescence system (ECL; Amersham Pharmacia Biotech, Cardiff, United Kingdom). Whenever necessary, blots were stripped by incubation for 30 minutes at 80°C in stripping buffer (TBS-T, 2% [wt/vol] SDS and 1% [vol/vol] 2-mercaptoethanol) and reprobed.
Differential proteome analysis of basal and TRAP-activated platelets by 2-DE We first optimized the experimental conditions for platelet stimulation, protein extraction, and protein separation by 2-DE (data not shown). Platelet stimulation using 5 µM TRAP for 30 seconds led to powerful platelet activation (not shown). Using 1 x 109 platelets in 1 mL of Tyrodes-HEPES buffer, which contained EGTA to prevent aggregation, we were able to obtain more than 1 mg protein for subsequent 2-DE analysis (Figure 1). Protein extraction by cell lysis in liquid nitrogen followed by TCA/acetone precipitation and delipidation resulted in highly reproducible 2-DE proteome maps demonstrating efficient prevention of proteolytic processes and other experimental variations that could potentially lead to irreproducible proteome maps.14,15 The experimental conditions resulted in high-resolution 2-DE gels for both the 4-7 and 6-11 narrow-range pH gradients (Figure 2). In consequence, a mean of 692 (± SE26) and 377 (± SE53) protein features were found in basal platelets on pI 4-7 gels and pI 6-11 gels, respectively.
Following platelet stimulation by TRAP, the number of resolved protein features dramatically increased by 138 and 95 features to 830 (± SE20) and 472 (± SE21) for the pI 4-7 and 6-11 analytical ranges, respectively. This elevation in features indicates effective stimulation by TRAP and an associated increased complexity of the platelet proteome.
To identify TRAP-induced changes in the platelet proteome, image analysis of 4 independent experiments was performed as shown in Figure 1. We focused on the identification of disappearing and appearing spots, as well as up- and down-regulation of spot intensities where the fold change was at least 2 (with P Forty-one (66%) of the 62 differentially expressed proteins were successfully identified by LC-MS/MS. They correspond to 31 different open reading frames (ORFs) (Table 1; Figure 2), with 6 ORFs being represented by multiple protein spots. A number of features were either lost or appeared upon stimulation. Fourteen proteins present on basal gels were not detectable following TRAP stimulation, and 8 proteins could not be identified on basal gels but were found on TRAP-stimulated gels. The other 19 protein features were present on both basal and TRAP-stimulated gels, but 9 showed a significantly higher level of intensity under basal conditions and 10 after stimulation with TRAP.
Examples of changes in some of the features, along with their identity, are shown in Figure 3. Figure 3A-B illustrates 2 sets of features that appear upon stimulation. In Figure 3A, a weak feature, identified as integrin-linked protein kinase-2 (ILK-2), is seen to undergo a marked increase in intensity upon stimulation. In Figure 3B, an array of features is seen under basal conditions that shifts to the left and elongates upon stimulation. These features were identified as pleckstrin, the major substrate for protein kinase C in platelets.21 Pleckstrin has 6 phosphorylation sites for protein kinase C,22 consistent with the presence of the multiple features. Figure 3C and D illustrate 2 features that disappear upon activation; these features correspond to Raf kinase inhibitory protein (RKIP) and regulator of G protein signaling 10 (RGS10), respectively.
Functional analysis and significant proteins detected
Many of the identified proteins belong to one of the following 3 groups of proteins: cytoskeletal, signaling, and protein processing (Table 1). The list of cytoskeletal proteins comprises actin, destrin, tropomyosin
Among the 31 ORFs identified, 8 were known signaling proteins. This constitutes the main group in the functional analysis, representing 37% of the total number of features identified, several of which correspond to forms of pleckstrin (Table 1; Figure 3B). The identified signaling proteins are pleckstrin, ILK-2, RKIP, RGS10, RGS18, 14-3-3- RGS18 phosphorylation RGS18 was represented in our analysis by 2 protein features separated by 0.6 pI units (Figure 4A). The disappearance of the protein feature at pI 6.94 together with the increase at pI 6.34 strongly suggests that RGS18 is phosphorylated to a high stoichiometry in response to PAR-1 receptor stimulation by TRAP. Further, the extent of this shift suggests that RGS18 is phosphorylated at more than one site. MS/MS analysis of the tryptic peptides for RGS18 revealed phosphorylation at Ser49 on the feature at pI 6.34 (Figure 4B). The MS/MS spectrum for the peptide NRLSLLVQKPEFHEDTR (m/z = 541.24, quadruply charged) showed a high confidence-matching pattern for the presence of y- and b-ions originating from this peptide. Masses corresponding to the respective b4 ion and successive ones (b5-b9), in line with the detected a-ions, were consistent with the loss of a phosphate group at Ser49 (Figure 4B).
Dok-2 tyrosine phosphorylation Dok-2 was detected as a feature that is up-regulated upon TRAP stimulation (Figure 5A). However, we did not identify a corresponding Dok-2 feature that was down-regulated, most likely because it underwent less than a 2-fold decrease, the cutoff for selection. Dok-2 has been previously shown to be phosphorylated on tyrosine in other cells.23 To investigate whether Dok-2 undergoes tyrosine phosphorylation in platelets, we carried out immunoprecipitation and Western blot analyses on basal and TRAP-stimulated platelets. TRAP stimulates tyrosine phosphorylation of a number of bands in platelets, as illustrated by Western blotting the whole cell lysate using the antiphosphotyrosine antibody 4G10 or following immunoprecipitation using 4G10 and Western blotting with the same antibody (Figure 5B). Western blotting 4G10-immunoprecipitated proteins with an anti–Dok-2 antibody showed an increase in the amount of precipitated Dok-2 after platelet activation with TRAP, which had a reduction mobility relative to Dok-2 present in the whole cell lysate as expected for phosphorylation (Figure 5B). When platelet lysates were immunoprecipitated with an anti–Dok-2 antibody and probed with an antibody to phosphotyrosine, we observed a significant increase in Dok-2 tyrosine phosphorylation levels after TRAP stimulation (Figure 5C), confirming that the adapter is phosphorylated on tyrosine residues in response to activation of PAR-1.
Since this is the first description of a member of the Dok or related insulin receptor substrates (IRS) family of proteins in platelets, studies were designed to investigate whether Dok-2 is also regulated by other platelet agonists. The data in Figure 6 demonstrate that phosphorylation of Dok-2 by thrombin is markedly potentiated under aggregating conditions as revealed by the inhibitory effect of the
We have investigated the proteome of platelets activated by the PAR-1–selective peptide TRAP to identify new proteins that are regulated during platelet activation. In these studies, outside-in signaling by the integrin IIb3 was inhibited by inclusion of EGTA. Inhibitors of the feedback mediators, adenosine diphosphate (ADP) and thromboxane A2, were not included so as to increase the chance of identifying new proteins. The 2-DE gel–based proteomic strategy offers a reproducible high-resolution protein separation method as the basis for differential proteome analysis. Narrow-range immobilized pH gradient strips were used during isoelectric focusing to increase the number of proteins resolved.24,25 Experimental artifacts and major proteolysis were avoided as demonstrated by the unchanged expression levels of the majority of proteins. We detected 62 features that underwent at least a 2-fold change in intensity upon platelet stimulation with TRAP. We were able to identify 41 of the 62 features, corresponding to 31 ORFs. Reasons for our failure to detect the other 21 features include a low level of expression, peptide hydrophobicity, and absence from available databases. A conservative 2-fold change in intensity was selected to avoid differences that were due to other factors, such as differences between gels. It is important to recognize however that this may have lead to an underestimate of the number of proteins that are differentially regulated in the activated platelets. It is important to emphasize that 2-DE electrophoresis is not an absolute separation technology in the sense that not all proteins are fully resolved from each other on the gel and that not all proteins are present on the gel. As a consequence, this is also likely to have lead to an underestimation of the number of differentially regulated proteins. Specific concerns include the following: (1) nondetection of a relevant feature due to the pI of the protein being outside the experimentally chosen analytical pH window; (2) a differentially regulated protein accounting not being detected because of comigration with proteins that are present at a much higher level; (3) failure of a protein to enter the gel; and (4) the protein may be represented by an array of 2 or more spots due, for example, to limited phosphorylation under basal conditions; as a consequence, changes in spot volume could be below the selected threshold of 2-fold. The 2-DE approach should therefore be used in combination with other approaches to address some of these concerns, although it should be emphasized that other approaches will also have their limitations. We were particularly interested in those proteins that were differentially regulated by phosphorylation, as this represents the major way of posttranslation modification of proteins in a stimulated cell. Consistent with this, a higher number of up-regulated features were found on pI 4-7 gels after TRAP stimulation, whereas there were more down-regulated features on pI 6-11 gels under these conditions. A change in the proteome map of this nature is consistent with a shift of proteins toward a more acidic pI due to phosphorylation. One of these differentially regulated proteins is pleckstrin, which gives rise to several features as illustrated in Figure 3B. Pleckstrin has been previously reported to be phosphorylated in platelets in response to TRAP.26 We also detected other proteins that have been shown to undergo phosphorylation in response to TRAP stimulation, including HSP2727 and myosin light chain.28 The fact that we have found these proteins in our analysis supports the validity of our experimental approach.
It is of interest to compare the present approach with that used by Maguire et al,29 who analyzed the phosphotyrosine proteome of thrombin-activated platelets by matrix-assisted laser desorption time-of-flight (MALDI-TOF) mass spectrometry and Western blotting. They found 67 proteins to be unique in the thrombin-activated platelet proteome when compared with resting platelets. From these 67 proteins, they identified 10, including the fibrinogen
As for the NetPhos 2.0 server,30 all the proteins identified in our analysis have some serine, threonine, or tyrosine theoretical phosphorylation site (data not shown). It is, therefore, interesting to discuss the functional role of some of these phosphorylated proteins. Pleckstrin phosphorylation by protein kinase C (PKC), for example, is known to be implicated in the reorganization of the cytoskeleton, a well-known consequence of platelet activation.31 We also detected the scaffolding protein 14-3-3-
Of particular interest in this study was the identification of signaling proteins that were not previously known to be regulated by phosphorylation. For example, we found 2 members of the RGS family, RGS10 and RGS18, to be differentially regulated after TRAP stimulation. RGS proteins are directly linked to GPC-R and inhibit signal transduction by increasing the guanosine 5'-triphosphatase (GTPase) activity of G protein We also report for the first time the presence of the adapter Dok-2 in platelets and demonstrate its participation in the signaling events that follow PAR-1 activation. Dok-2 is the first member of the Dok or IRS family of proteins to be found in platelets. Dok-2 has pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains and several other features consistent with its role as an adapter including the presence of 13 potential tyrosine phosphorylation sites and 6 PXXP motifs.23 Dok-2 acts downstream of tyrosine kinases in other cells and has been shown to participate in cell adhesion and spreading.47,48 Dok-2 has also been reported to bind c-Abl, regulating Abl kinase activity and mediating cytoskeletal reorganization,49 and to associate with rasGAP inhibiting the MAP kinase pathway.23
Although the role of Dok-2 in platelets is unknown, it is of particular interest that a recent study demonstrated the ability of Dok-1 to bind to the first of the 2 NPXY motifs in the tail of the In conclusion, we have used a new approach to analyze signaling cascades in activated platelets. This approach, based on the differential analysis of the platelet proteome, yielded the identification of several novel signaling proteins and phosphorylation events in response to PAR-1 activation. The list of proteins of interest includes the adapter Dok-2, the first member of this family to be found in platelets, and demonstration of phosphorylation of RGS18. A further understanding of the role of these proteins, and others identified in this study, will contribute to a better understanding of the thrombin receptor signaling pathway, building the basis for the identification of new drug targets and development of therapeutic agents for thrombotic diseases.
We gratefully acknowledge the constant support given by Mr David Chittenden and Mrs Vivien Freemen (Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford). Dr Sripadi Prabhakar would like to thank the Director of the Indian Institute of Chemical Technology, Hyderabad, and the Council of Scientific and Industrial Research, India, for granting leave.
Submitted July 15, 2003; accepted October 28, 2003.
Prepublished online as Blood First Edition Paper, November 26, 2003; DOI 10.1182/blood-2003-07-2392.
Supported by the Biotechnology and Biological Sciences Research Council (BBSRC). N.Z. is a Dorothy Hodgkin Fellow of the Royal Society and Research Fellow of Wolfson College, Oxford. S.P.W. holds a British Heart Foundation Chair. A.C.P. is a Wellcome Trust Prize Student.
An Inside Blood analysis of this article appears in the front of this issue.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Angel García, Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Rd, Oxford, OX1 3QU, United Kingdom; e-mail: angel{at}glycob.ox.ac.uk.
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Abstract
Introduction
volumes of all spots resolved in the gel. Variations in protein expression were calculated as the ratio of average volumes (%V) and carefully validated by repeated image analysis by human operators. Differential expression of a protein present in both the basal and TRAP gels was considered significant when fold change was at least 2 and P was no more than .05 after rank sum test applied on %V values. 
.05). Further, approximately 70% of protein features were present in at least 3 of the 4 gels per group (basal or TRAP), which was the requirement for being considered for the analysis. These conservative criteria for protein detection aimed to avoid misidentifications due to gel-to-gel variations. Applying these criteria, 62 differentially regulated protein features were identified. Thirty-four of these were found in the pI 4-7 analytical range, with 18 being up-regulated and 16 down-regulated (
, Dok-2, and heat shock protein 27 (HSP27). Many of the cytoskeletal proteins could also be classified as part of the signaling group on the grounds that their activity is regulated by phosphorylation, including myosin light chain and CLP-36. Some of the signaling proteins have been previously described in platelets but were not known to undergo phosphorylation, including RGS10 and RGS18, whereas for others this is the first description of their presence in platelets, including the adapter Dok-2 and RKIP. This study has also identified a number of nonsignaling proteins whose presence in platelets is reported for the first time, namely transgelin 2, ubiquitin conjugating enzyme E2 N, endoplasmic reticulum protein 29 (ERp29), mannose-6-phosphate isomerase, D-prohibitin, and the hypothetical protein Q96GF6. This latter is a possible small magnesium-dependent phosphatase, which had so far existed in databases on the basis of an ORF prediction from cDNA sequences. 
receptor. Eur J Immnunol. 2003;33: 85-91.
