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Blood, 1 December 2004, Vol. 104, No. 12, pp. 3429-3436. Prepublished online as a Blood First Edition Paper on July 29, 2004; DOI 10.1182/blood-2004-05-1918.
PLENARY PAPERS Functional assessment and specific depletion of alloreactive human T cells using flow cytometryFrom the Transplant Immunology Section, Department of Blood and Marrow Transplantation, MD Anderson Cancer Center, Houston, TX; and the Department of Hematology, Fleury-Diagnostic Medical Center, Jabaquara, Sao Paulo, Brazil.
Human T-cell alloreactivity plays an important role in many disease processes, including the rejection of solid organ grafts and graft-versus-host disease (GVHD) following allogeneic stem cell transplantation. To develop a better understanding of the T cells involved in alloreactivity in humans, we developed a cytokine flow cytometry (CFC) assay that enabled us to characterize the phenotypic and functional characteristic of T cells responding to allogeneic stimuli. Using this approach, we determined that most T-cell alloreactivity resided within the CD4+ T-cell subset, as assessed by activation marker expression and the production of effector cytokines (eg, tumor necrosis factor [TNF] ) implicated in human GVHD. Following prolonged stimulation in vitro using either allogeneic stimulator cells or viral antigens, we found that coexpression of activation markers within the CD4+ T-cell subset occurred exclusively within a subpopulation of T cells that significantly increased their surface expression of CD4. We then developed a simple sorting strategy that exploited these phenotypic characteristics to specifically deplete alloreactive T cells while retaining broad specificity for other stimuli, including viral antigens and third-party alloantigens. This approach also was applied to specifically enrich or deplete human virus-specific T cells.
The recognition of alloantigens by human T cells forms the basis for several clinically significant disease processes, including graft-versus-host disease (GVHD) arising in the setting of stem cell transplantation (SCT).1,2 In SCT, numerous interventions have been attempted to reduce the risk of GVHD, most of which have targeted the number and/or function of T cells transferred from the donor to the recipient.3 Inhibitors of T-cell activation, including cyclosporine A or tacrolimus, are administered to nearly all SCT recipients (reviewed in Champlin et al4 and Ho and Soiffer5). Additional strategies have involved the elimination of T cells within the transferred graft, either by negative depletion of CD3+ T cells or by the transfer of positively selected CD34+ stem cells.6-8 In other cases, polyclonal or monoclonal antibodies used to purge the allograft or administered to the recipient shortly after graft infusion, including antithymocyte globulins9 or Campath-1H, 10 effectively result in the depletion of graft-derived T cells. While these strategies reduce the risk of GVHD after SCT, 5,11 the benefits of decreases in morbidity due to GVHD are often offset by the simultaneous nonspecific reduction in the numbers of nonalloreactive T cells, leading to an increased risk of infection and relapse following T-cell depletion.12,13 For many SCT candidates, suitable matched donors are not available, precluding the application of this potentially curative treatment modality. Consequently, most transplantations are performed using matched sibling or unrelated donors due to our inability to selectively reduce alloreactivity in the setting of mismatched transplantation. Thus, practical methods that allow us to specifically deplete alloreactive T cells, while sparing other T-cell populations, could have significant clinical use in the setting of SCT. Here, we demonstrate that alloreactive CD4+ T cells may be identified by CD4 up-regulation and coexpression of surface activation markers. We also show that sort-based depletion of cells with this phenotype leaves behind a CD4+ and CD8+ T-cell population that is diverse and capable of responding to pathogens but that is functionally anergic following restimulation with alloantigens. This approach also was shown to be similarly useful for the depletion and enrichment of virus-specific human T cells.
Preparation of responder and stimulator cells This research was approved by the institutional review board at the M.D. Anderson Cancer Center. Informed consent was obtained according to principles outlined in the Declaration of Helsinki. Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll-Hypaque technique sedimentation from heparinized whole blood of healthy volunteer cytomegalovirus (CMV)seropositive donors. For stimulator cells, PBMCs from 10 unique donors were irradiated at 25 Gy, pooled, and cryopreserved for allogeneic stimulation experiments. For control stimulations, autologous PBMCs obtained from healthy donors were similarly irradiated and cryopreserved. Cytokine flow cytometry assay For initial experiments establishing the kinetics of cytokine production and activation marker coexpression in the cytokine flow cytometry assay, 106 freshly isolated responder PBMCs were co-incubated with either CMV lysates (BioWhittaker, Walkersville, MD) or an equal number of thawed autologous or pooled allogeneic PBMCs in 24-well tissue culture plates in 2 mL of media (RPMI1640; GIBCO Life Technologies, Grand Island, NY) supplemented with 10% human AB serum, L-glutamine, penicillin, and streptomycin (Sigma, St Louis, MO). Stimulator cells were labeled with the membrane dye PKH-2 (Sigma) to enable identification of activation within responder cells. Following stimulation, cells were washed and brefeldin A (Sigma) was added to enable accumulation of effector cytokines in the cytoplasm. We then permeabilized cells with FACSPerm Solution II (BD Biosciences, San Jose, CA) and examined responder T cells for the simultaneous expression of surface activation markers and intracellular cytokine expression. Assessment of T-cell activation by flow cytometry
FACS analyses were performed using fluorescein isothiocyanate (FITC), phycoerythrin (PE), peridinin chlorophyll protein (PerCP), and antigen-presenting cell (APC)conjugated monoclonal antibodies (MAbs) specific for human CD4, CD8, CD14, CD38, CD25, CD69, HLA-DR, CD71, CD58, CD122, CD152, CD103, CD134, anti-interferon [IFN] CFSE proliferation assay
To assess proliferation in responder cells, we labeled them with carboxyfluorescein diacetate (CFSE) (Molecular Probes, Eugene, OR), a highly fluorescent dye that is transferred to daughter cells, resulting in a linear decrease in fluorescence. We labeled PBMCs with 0.6 µM CFSE for 10 minutes at room temperature, quenched the reaction with AB serum, and washed them twice with RPMI 1640 containing 10% AB serum. The starting frequency of alloreactive T cells was estimated based on the median of fluorescence intensity (MFI) and the percentage of proliferating cells after 7 days of mixed lymphocyte reaction (MLR) culture. The precursor frequency of the starting population was calculated based on the following formula, where a = MFI (CD4hi population), b = MFI (CD4int population), c = frequency of CD4hiCD38+ T cells following alloantigen stimulation (in percent), and n = cell divisions in the alloreactive T-cell population (log2[a/b]):
Specific depletion of alloreactive or CMV-specific CD4+ T cells To deplete antigen-specific CD4+ T cells, we stimulated 108 responder PBMCs with CMV lysates, an equal number of PBMCs from an allogeneic pool, or autologous PBMCs. After 7 days, we harvested and washed responder cells and labeled them with anti-CD4PerCP and CD38APC MAb (BD Biosciences). We then sorted cells using a FACSAria flow cytometer (BD Biosciences), excluding CD4hiCD38+ cells. Prior to sort-based allodepletion, cells were resuspended in PBS containing 0.1% AB serum and disodium edetate (5 mM final concentration) (Sigma). Following sorting, cells were washed twice in PBS prior to further functional assessment. For spectratyping studies, we selectively purified both CD4hiCD38+ and CD4intCD38 populations. For assessment of residual antigen-specific T-cell function, we rested the residual population of cells for 16 hours and then restimulated them with either thawed allogeneic or autologous PBMCs or CMV lysates. Secondary stimulations were performed for either 3 or 7 days and assessed as described for primary stimulations using the cytokine flow cytometry (CFC) assay. Preclinical assessment of alloreactive T-cell depletion We obtained cells from a healthy donor (donor C) and stimulated them with thawed and irradiated PBMCs from clinical apheresis products obtained from 2 different HLA-mismatched donors (A and B). Following 7 days of stimulation, we depleted CD4highCD38+ alloreactive T cells by sorting and performed secondary stimulations and assessed residual autologous, CMV-specific, and third-party alloreactivity by CFC. Spectratyping assay
Immediately after sorting, we extracted total RNA using a commercial kit (Tel-Test, Friendswood, TX) and prepared cDNA using reverse transcription (Applied Biosystems, Foster City, CA). We then amplified the CDR3 regions in 23 T-cell receptor (TCR) V Statistical analyses Data were collected, analyzed, and displayed using Prism software (GraphPad, San Diego, CA) and Illustrator software (Adobe, Seattle, WA) using Macintosh computers (Apple, Cupertino, CA). Nonparametric comparisons were performed using the Mann-Whitney U test. We performed intergroup comparisons using a nonpaired, 2-tailed one-way analysis of variance (ANOVA) test. Values of P less than .05 were considered significant.
Development of a cytokine flow cytometry assay of human T-cell alloreactivity CFC was first developed by Waldrop et al16 to quantitate human virus-specific T cells. In subsequent clinical studies, we demonstrated that risk for opportunistic infection was associated with diminished CMV-specific T-cell responses assessed by CFC17 and that CFC accurately reflected clinically meaningful immune reconstitution. While CFC methods now have been applied to study a wide range of human pathogens, CFC methods have not been routinely applied to study alloreactive T-cell responses in humans. To better characterize human T-cell alloreactivity, we first isolated PBMCs from a group of 10 HLA-disparate individuals, irradiated them, and pooled them to provide a stimulus for responder T cells. We isolated responder PBMCs from healthy donors and cocultured them with the pooled allogeneic stimulator cells for varying periods. Following stimulation, we examined responder T cells for the simultaneous expression of phenotypic markers associated with T-cell maturation or activation and the production of effector cytokines by CFC.
Kinetics of human primary and secondary alloreactivity may be assessed using cytokine flow cytometry. We initially labeled stimulator cells with PKH-2 to determine how long irradiated allogeneic stimulators persisted in MLRs. PKH-2+ stimulator cells were present in declining numbers over the first 24 to 48 hours of stimulation but were undetectable thereafter (data not shown). These data suggest that indirect allorecognition is the primary mechanism operative in MLR, following an initial period where both direct and indirect allorecognition may occur. Following stimulation with pooled allogeneic stimulator cells, the production of effector cytokines, including TNF
Activation marker expression and proliferation occur exclusively in CD4hi T cells following chronic stimulation Following short-term stimulation, such as the 6-hour period used to stimulate CMV-specific CD4+ T cells with viral antigens in CFC assays, the intensity of CD4 expression within CD4+ lymphocytes maintains a fairly narrow and Gaussian distribution.17 In contrast, following chronic stimulation with either CMV antigens or pooled allogeneic stimulator cells, we noted that the peak of fluorescence intensity demarcating CD4 expression initially widened and then became segregated into 2 distinct populations with intermediate (CD4int) and high (CD4hi) staining intensity (Figure 2A). At 4 days, CD4 intensity remained Gaussian, similar to earlier intervals. By 6 days, a clear shoulder consisting of the CD4hi population was evident, and this population was well defined by 7 days (Figure 2A). We excluded the possibility that this increase in surface intensity was simply related to an increased size of a CD4+ blast population, as the increase in fluorescence intensity (up to 10-fold) was disproportionate to cell size as assessed by scatter and not seen in similar analyses of other surface markers that would also be expected to increase in proportion to blast size (data not shown).
We then stimulated PBMCs from healthy donors with pools of allogeneic stimulator cells for 7 days and simultaneously assessed the intensity of CD4 expression and the expression of 10 different T-cell activation markers (Figure 2B). As expected, given known variances in the kinetics of activation marker up-regulation, some markers were expressed more intensely following chronic activation using either viral antigens or alloantigens (eg, CD38, CD58, and HLA-DR), while others (eg, CD69 and CD103) were present at only minimally increased intensity on the surface of activated T cells. Regardless of the intensity of activation marker expression following allogeneic stimulation, we observed increased expression of each activation marker only on the subset of CD4+ T cells that up-regulated surface CD4 following stimulation (ie, CD4hi T cells) (Figure 2B). We consistently observed a close association between CD4 up-regulation and activation marker expression; for each marker assessed, CD4hi cells all were activation-marker positive, while CD4int cells were activation-marker negative. We observed similar results when PBMCs from CMV-seropositive donors were stimulated for 7 days with CMV lysates (data not shown).
We additionally examined the association between CD4 up-regulation, secondary activation-marker expression, and effector cytokine production. In each case, cytokine production within the CD4hi population was contained within the subpopulation of cells coexpressing activation markers, further demonstrating the close association between CD4 up-regulation, activation-marker coexpression, and effector cytokine production (data not shown). Similar associations were seen in more limited analyses using IFN These experiments suggested that up-regulation of CD4 was a uniform and reliable indicator of viral and alloantigen activation in CD4+ T cells. To determine whether CD4 up-regulation also was associated with the proliferation of activated CD4+ T cells, we labeled healthy donor PBMCs using the fluorescent dye CFSE prior to stimulation with either CMV or pools of alloantigenic PBMCs. We found decreases in CFSE fluorescence intensity only in CD4hi cells, suggesting that proliferation, similar to activation-marker expression, was restricted exclusively to the CD4hi subset (Figure 2C). Conversely, we did not observe CFSElow cells within the CD4int population, suggesting that these cells had not proliferated, consistent with the lack of activation-marker expression on these cells. Because CFSE fluorescence intensity declines linearly following cell division, we were able to calculate the number of CD4hi cell divisions during the stimulation period.18 Based on 5 experiments from unique donors, we determined that cells divided approximately 4 times during 7 days (Figure 2D). Assuming that nondividing cells did not preferentially die during the culture period, we extrapolated the starting frequency of alloantigen-specific T cells from the final frequencies of CD4hiCD38+ T cells within the total CD4+ population. We estimate the median frequency of alloantigen-specific CD4+ T cells at 6.9% ± 1.5% (data not shown). This estimate is consistent with theoretical estimates of the frequency of alloantigen-specific cells in the TCR repertoire but significantly higher than prior estimates of alloreactive T-cell frequencies obtained using limiting dilution assay methods.19 Elimination of specific CD4+ and CD8+ T-cell function by depletion of activated CD4hi T cells
Because CD4 up-regulation appeared to be a hallmark of activation following either viral or alloantigen stimulation, we reasoned that depleting the CD4hi population following activation would selectively eliminate T cells responding to a specific stimulus. To test this strategy, we obtained PBMCs from CMV-seropositive healthy donors and stimulated them with either CMV lysates or irradiated pools of allogeneic stimulator cells. Instead of using CD4 expression independently, we sorted cells on the basis of the simultaneous expression of a secondary activation marker to define a sort gate that most clearly resolved subpopulations of activated CD4+ T cells. Based upon our analyses of multiple activation markers and CD4 up-regulation (Figure 2B), we found that CD38 coexpression was particularly well suited for this purpose. Following 7 days of stimulation with a pool of allogeneic stimulator cells, we stained the PBMC population with antibodies to surface CD4 and CD38 and then used high-speed sorting to deplete cells with the CD4hiCD38+ phenotype. A typical experiment is shown (Figure 3). Few PBMCs from a healthy CMV-seropositive donor produced intracellular TNF
Following alloantigen stimulation and the depletion of CD4hiCD38+ T cells, the residual population failed to respond to repeat alloantigen challenge above the baseline level of cytokine production seen with autologous stimulation (0.22% of CD4+ T cells versus 0.23% for autologous restimulation; Figure 4B). Importantly, CMV reactivity within the depleted CD4+ T-cell population was preserved and was slightly higher than the baseline frequency (2.99% of CD4+ T cells), as expected, given the depletion of a CD4+ subpopulation devoid in CMV specificity (Figure 3B). We also performed the same experiment in the reverse direction, stimulating first with a CMV lysate and then restimulating the population depleted of CD4hiCD38+ T cells with autologous stimulators, the allogeneic PBMC pool, or CMV antigens. We found that CMV reactivity was eliminated following depletion (0.17% TNF
Our initial experiments demonstrated that the bulk of cytokine production among alloantigen-stimulated PBMCs occurred in CD4+ and not in CD8+ T cells. However, significant numbers of CD8+ T cells produced IL-2, IFN Aggregate data from depletion of alloreactive CD4+ T cells from 5 donors and depletion of CD4hiCD38+ T cells following CMV lysate stimulation in 4 donors confirmed these results (Figure 3C). Following initial allogeneic stimulation and depletion of alloreactive CD4hiCD38+ T cells, alloreactivity in CD4+ and CD8+ T cells upon restimulation was not significantly different than that following autologous restimulation. Similarly, depletion of CMV-reactive CD4hiCD38+ T cells resulted in the loss of functional CD4+ and CD8+ T-cell reactivity to a level statistically indistinguishable from that seen after autologous stimulation (Figure 3C).
The residual T-cell receptor (TCR) repertoire following depletion of alloreactivity is diverse. In the experiments described in Figure 3, we established that depletion of CD4hiCD38+ T cells following alloantigen stimulation resulted in a residual population of PBMCs that remained capable of responding to viral antigens but was unable to respond to stimulation with the original alloantigenic stimulus. While we suspected that the ability to retain responsiveness to CMV was indicative of a diverse residual TCR repertoire, we proved this formally by analyzing diversity using molecular spectratyping. We amplified the CDR3 regions in 23 TCR V
We found that the CD4hiCD38+ population obtained after CMV stimulation was the most restricted, with many TCR V
Depletion of alloreactive T cells following stimulation using cryopreserved apheresis products preserves viral and third-party alloantigen responses. In the experiments described in Figures 1, 2, 3, 4, we stimulated freshly obtained healthy donor PBMCs with pools of cells from 10 allogeneic donors. The clinical application of alloreactive T-cell depletion, in contrast, will likely require the use of cryopreserved PBMC products used as stimulators in one-way MLR reactions to deplete specific alloreactivity against a single HLA-mismatched recipient. To determine the feasibility of this approach in a preclinical setting, we obtained residual cryopreserved apheresis products collected routinely in a clinical cellular processing laboratory. Products from 2 HLA-mismatched donors that were CMV-seropositive (donors A and B) were used to stimulate cells from a healthy donor (donor C) in parallel one-way MLR stimulations (C
The results of our studies demonstrate that CFCs may be used to assess the frequencies of CD4+ and CD8+ T cells responding to alloantigen stimulation, leading to a more complete phenotypic characterization of alloreactive T cells in humans. The use of CFCs allowed us to study the functional characteristics of individual cells responding to stimulation in the MLR, leading us to conclude that (1) the bulk of human alloreactivity in the in vitro MLR resides in the CD4+ T-cell population; (2) the kinetics of alloantigen activation of T cells in the CFC assay are consistent with prior results using lymphocyte proliferation responses to assess alloreactivity; (3) CD4 up-regulation is a hallmark of chronic activation following either alloantigen or CMV stimulation; and (4) within the CD4+ T-cell subset, proliferation and the expression of secondary activation markers are restricted exclusively to CD4+ T cells expressing high levels of surface CD4 (CD4hi cells). Our findings regarding CD4 up-regulation are consistent with prior reports demonstrating that murine CD4+ T cells up-regulated levels of CD4+ following recall antigen20 or alloantigen challenge, 21 and with the observation that activated influenza-specific human CD4+ T cells identified by class II HLA-peptide tetramer staining were contained within the CD4hi population.22 We then stimulated cells with either viral antigens or pooled alloantigenic stimulator cells and subsequently depleted cells with the activated CD4hiCD38+ phenotype. Further experiments demonstrated that the residual PBMCs lacked the ability to respond to the initial stimulus but retained the ability to respond to alloantigens or viral antigens in cells stimulated with CMV or alloantigens, respectively, and retained a diverse TCR repertoire. Finally, we applied these methods to clinically obtained apheresis products, resulting in the depletion of specific alloreactivity in a one-way MLR with the preservation of CMV-specific T-cell responses and T cells capable of responding to third-party alloantigens.
Other investigators have developed alternate approaches to deplete23-31 or anergize32 alloreactive T cells. In one general strategy, cells expressing the CD25 antigen associated with the interleukin-2 receptor are depleted using a toxin-conjugated monoclonal antibody following the stimulation of donor cells with alloantigenic stimulators. In contrast to some previously described approaches, our method uses readily available fluorochrome-conjugated MAbs specific for easily identified surface markers. The use of 2 markers in combination greatly enhances the ability to discriminate activated and resting cells by flow cytometry. There is also a historic precedent for the use of sorted or otherwise separated cellular populations in clinical use, and such methods have proven safe in humans. Recent clinical studies have demonstrated that the infusion of relatively modest numbers of polyclonal CMV-specific T cells (ie, < 105/kg) may be sufficient to limit viral reactivation after allogeneic SCT.33 The degree of allodepletion we achieved ( Our results also suggest that alloreactivity in the CD8+ T-cell population is abrogated by the depletion of alloantigen-stimulated CD4+ T cells. Indeed, while a significant fraction of CD8+ T cells also expressed activation markers and produced cytokines following primary allogeneic stimulation, these cells were not capable of effector cytokine production if alloreactive CD4hiCD38+ T cells were first depleted prior to restimulation with alloantigens. These data are consistent with murine data that suggest that CD4+ T-cell help is more critical to the functional reactivation of CD8+ T cells than for the development of a primary response.34 While these data suggest that the depletion of alloreactive CD4+ T cells alone may be enough to lessen the risk of GVHD in the mismatched setting, clinical studies in humans will be required to assess whether the depletion of activation-markerexpressing CD8+ T cells will further decrease the risk of GVHD and whether the elimination of this T-cell subset might affect graft-versus-malignancy effects. Ideally, if unsorted CD8+ T cells could be safely infused in a cellular product depleted of alloreactive CD4+ T cells, CD8+ T cells specific for cancer-associated antigens35 would be preserved, increasing the likelihood that GVHD risk might be alleviated while sparing T cells important in preventing relapse. Indeed, in a recent trial wherein total CD8+ T cells were depleted from allogeneic donor grafts, a higher incidence of peri-engraftment fever and rash along with a similar rate of noncutaneous grade 2 to 4 GVHD were observed, relative to nondepleted controls.36 In another study characterizing post-SCT clonal T-cell expansions, CD4+ donor lymphocyte infusion was found to elicit a potent allogeneic response mediated by expanded alloreactive CD8+ T cells.37 In aggregate, these data support the notion that the selective depletion of alloreactive donor CD4+ T cells will likely reduce GVHD by limiting responses mediated both by CD4+ and CD8+ T cells recognizing recipient antigens. The studies presented in this report are clearly at a preclinical stage. Additional studies in haploidentical donors and recipients and more closely matched pairs are needed. We also will need to confirm the consistency of this approach under conditions approximating those in a clinical cell-processing laboratory. At this time, MAbs to CD4 and CD38 expressly approved for clinical use are not available; however, research-grade MAbs with the appropriate infectious screening may be acceptable for phase 1/phase 2 trials and are less likely to mediate toxicity than immunotoxin conjugates.23,27,30 Similarly, reagents used in other preclinical approaches (eg, CFSE31) may be toxic to T cells at higher concentrations, potentially affecting the safety of such methods in humans. However, the growing body of clinical experience using MAbs and the increasing availability of high-speed sorting suggest this approach as a credible alternative to existing methods. Additional studies also will be required to determine the frequencies of alloreactive CD4+ and CD8+ T cells that may be depleted in the setting of HLA-matched transplantation, given the likelihood that such frequencies are likely to be far lower than in the mismatched setting examined in the current studies. Even if this approach may not be extended to the setting of HLA-matched siblings, the potential to reduce the risk of GVHD in the setting of mismatched and haploidentical transplantation while sparing beneficial T-cell subsets may extend the benefits of transplantation to many subjects who are excluded from candidacy. These include older recipients at higher risk of GVHD than younger recipients and recipients lacking suitably matched sibling or registry donors. Finally, we believe that CFC-based assessment of alloreactivity may have independent clinical value as a marker of the risk for GVHD and as a measure of the success of clinical strategies to eliminate GVHD-mediating T cells in vitro and in human subjects.
The authors thank Karen Ramirez for assistance with sorting; Pariya Sukhumulchandra for assistance with spectratyping; Susan Bryan for technical assistance; Safa Karandish and Elizabeth Shpall for assistance with apheresis samples; and Mike McCune for thoughtful review of the manuscript.
Submitted May 20, 2004; accepted July 12, 2004.
Prepublished online as Blood First Edition Paper, July 29, 2004; DOI 10.1182/blood-2004-05-1918.
Supported in part by grants from the Gillson Longenbaugh Foundation (K.V.K.) and the National Institutes of Health (RO1 CA81247) (J.J.M.).
An Inside Blood analysis of this article appears in the front of this issue.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Krishna V. Komanduri, Transplant Immunology Section, MD Anderson Cancer Center, SCRB 3.3019, Unit 900, 7455 Fannin St, Houston, TX 77030; e-mail: kkomanduri{at}mdanderson.org.
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