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Blood, Vol. 95 No. 2 (January 15), 2000:
pp. 646-650
NEOPLASIA
From the Department of Haematology, St. George's Hospital Medical
School, London, United Kingdom.
Long-term survivors of aplastic anemia (AA) have a high incidence of
clonal disorders, in particular paroxysmal nocturnal hemoglobinuria
(PNH), myelodysplastic syndromes (MDS), and acute nonlymphocytic
leukemia. To investigate the potential involvement of N-RAS gene
mutations in the predisposition to leukemic evolution, a subset of
patients at potentially increased risk for clonal disease was selected
based on evidence of existing clonal evolution. Nine patients showed a
monoclonal pattern of X-chromosome inactivation, 18 demonstrated a PNH
clone, and in 3 MDS developed during the course of this study. No
mutations were detected during the aplastic phase of disease; 2 of 3 patients with MDS after AA also showed no mutations. However, in 1 patient in whom the disease transformed from AA/PNH to MDS, a mutation
of GGT
Idiosyncratic aplastic anemia (AA) is a rare
hematologic disease characterized by peripheral blood pancytopenia and
bone marrow hypocellularity. Long-term survivors of AA after
antithymocyte globulin (ATG) therapy have a high incidence of clonal
disorders, including paroxysmal nocturnal hemoglobinuria (PNH),
myelodysplastic syndromes (MDS), and acute nonlymphocytic leukemia
(ANLL).1-6 PNH is itself an acquired clonal stem cell
disorder, but the development of other clonal disorders, such as MDS
and ANLL, has also been observed in patients with PNH as a late
terminal event.7-13
An activating mutation of N-RAS in codons 12, 13, or 61 has been
reported to occur in 20% to 30% of patients with ANLL and MDS.14-16 MDS with an N-RAS mutation has an increased
likelihood of evolution to ANLL.17 If patients with AA or
PNH had an increased incidences of N-RAS mutation, this might explain
the evolution to malignant disease. Several groups,18-20
including our own, have examined series of patients with AA or PNH and
have not detected any activating mutations.
Although MDS or ANLL eventually develops in as many as 26% of patients
with AA, this may occur over a period of 20 years, and previous studies
have been subject to the criticism that individual patients may not
have been at risk for clonal evolution at the time of the study. We
therefore decided to extend our previous work by examining a selected
subgroup of patients with evidence of clonal disease. Three were
patients in whom frank MDS developed during the course of our study, 18 were patients with AA with a PNH clone detectable by flow cytometry,
and 9 were female patients with AA with a clonal pattern of
X-chromosome inactivation. None of the 30 patients had detectable
mutations in codons 12, 13 or 61, of the N-RAS gene during the AA or
PNH phase of disease. However, 1 patient with a PNH clone later evolved
to MDS and to ANLL, and an acquired activating mutation gly-> asp at
codon 13 on evolution to MDS, concurrent with the loss of the specific
19bp deletion mutation within his PIG-A gene.
Patients
Cell separation and DNA and RNA extraction
Clonality analysis by RT-PCR
Reverse transcription-polymerase chain reaction.
Patients heterozygous for the nt.1311 C/T polymorphism in the G6PD
gene21,22 were analyzed by reverse
transcription-polymerase chain reaction (RT-PCR). A maximum 2 µg
total cellular RNA from granulocytes or lymphocytes was incubated at
80°C for 3 minutes, then made up to 20.2 µL final volume
containing 50 µmol/L antisense primer D
5'-GGTGCAGCAGTGGGGTGAAA-3'), 1 × first-strand
buffer, 500µmol/L each dNTP, 25 U RNasin (Promega, Southampton, UK),
and 250 U MMLV-RT (Gibco-BRL, Paisley, UK) and incubated at 42°C
for 1 hour. The reaction was made up to 100 µL in 1 × PCR
buffer, 10µmol/L primer sense A
5'-GACCAAGAAGCCGGGCATGTT-3'), and 1 U Taq DNA
polymerase. The amplification was carried out for 40 cycles of 1 minute
at 94°C, 1 minute at 56°C, and 1 minute at 72°C. One microliter of the first-round PCR product was added to 49µL of a
fresh reaction mix and reamplified using15 pmol each of sense F
5'-TGTTCTTCAACCCCGAGGAGT-3') and antisense M
5'-AAGACGTCCAGGATGAGGTGATC-3') primers. Primer M contained
2 mismatches to the gene sequence to create a Bcl I restriction site if
the T allele was present.
Digestion of RT-PCR products.
A reaction mix was made up containing 1 µL of appropriate 10×
buffer, 1 µL Bcl I (New England BioLabs, Hitchin, UK), and 8 µL DNA
amplified with the mismatched primer and incubated at 50°C for 1 hour. Digested products were separated by electrophoresis on 4%
NuSieve agarose gels (FMC Bioproducts, Rockland, ME) containing ethidium bromide and visualized using a UVP Imager. The image was saved
on disk, and the bands were quantitated using ImagerSoft 1D2D software.
Control experiments using artificial mixtures of C/C and T/T DNA
demonstrated a linear relationship with band intensity (data not shown).
Detection of N-RAS mutations
Amplification of the N-RAS gene by PCR. Regions of the N-RAS gene spanning codons 12 and 13 or 61 were amplified from cellular genomic DNA; 100 ng DNA was used in a 50 µL PCR reaction. Primers sense NA12, 5'-GACTGAGTACAAACTGGTGG-3 and antisense NB12 5'-CTCTATGGTGGGATCATATT-3') amplified an exon 1 fragment of 109 bp including codons 12 and 13. Primers sense NA61 5'-GGTGAAACCTGTTTGTTGGA-3 and antisense NB61 5'-ATACACAGAGGAAGCCTTCG-3') amplified an exon 2 fragment of 103 bp including codon 61. Blotting. Thirty-microliter PCR products were denatured with 300 µL of a solution containing 0.4 mol/L NaOH/21 mmol/L EDTA at 95°C for 5 minutes, cooled on ice, and neutralized with 300 µL of a solution containing 0.92 mol/L Tris, pH 7.4. Equal portions of each denatured product were transferred to 3 replicate Hybond NFP nylon filters (Amersham Pharmacia) wetted with 20 × SSC (3 mol/L NaCl, 0.3 mol/L sodium citrate, pH 7), using a slot blot apparatus (Minifold II, Schleicher & Schuell). Filters were air-dried, and DNA was cross-linked to the membrane by exposure to ultraviolet light. Labeling of oligonucleotide probes. Twenty-mer oligonucleotide probes complementary to each potential wild-type and mutant N-RAS sequence for codons 12, 13, and 61 were obtained from Clontech.
Allele-specific oligonucleotide hybridization. Hybridizations were performed with a mixture of 3 oligonucleotide probes with a common melting temperature. Filters were prehybridized at 56°C for 1 to 2 hours in hybridization buffer (5 × SSPE, 1% SDS, 0.1 mg/mL herring sperm DNA, 5 × Denhardt solution). This was replaced with fresh buffer containing the probe and hybridized at 56°C for another 1 to 2 hours. The filters were washed in 2 × SSPE, 0.1% SDS, for 20 minutes at room temperature and then in 5 × SSPE, 0.1% SDS, at 56°C for 1 hour. The final stringent wash was carried out at 66°C for codons 12 and 13 probes, or at 62°C for codon 61 probes, in 5 × SSPE, 0.1% SDS, for 10 minutes with continuous agitation. Membranes were exposed to Kodak XAR film (Eastman Kodak, Rochester, NY) at room temperature for 3 to 4 hours or at 70°C for longer periods. Membranes showing nonspecific signals were rewashed, increasing the temperature by 1°C each time until such signals were no longer detectable. Quantification of GPI-linked surface proteins Analysis of GPI-anchored membrane proteins on neutrophils, monocytes, lymphocytes, and erythrocytes was performed by flow cytometry using monoclonal antibodies specific to CD55, CD59, CD14, CD16, and CD66c as previously described.12PCR amplification of the PIG-A gene The entire coding region of the PIG-A gene was amplified in 8 overlapping fragments, to include the complete exons and the 5' and 3' intron/exon boundaries. Genomic DNA (100 ng) was used in a reaction containing 1 × standard buffer with 1.5 mmol/L MgCl2, 100µmol/L each dNTP, 15 pmol each of sense and antisense primers, and 1 U Taq DNA polymerase (PE Applied Biosystems, Warrington, UK) in a total volume of 50 µL, for 35 cycles of 45 seconds at 94°C, 30 seconds at 57°C, and 1 minute at 72°C, followed by 5 minutes at 72°C for 1 cycle.RT-PCR for the PIG-A gene A maximum 1µg cellular RNA from PMN or MNC was used as a template to make cDNA in a 20-µL reaction containing 0.4 µg random primers (Promega), 1 × first-strand buffer, 200 µmol/L of each dNTP, and 200 U RNase H free reverse transcriptase (Superscript II; Gibco-BRL) at 42°C for 60 minutes. Two microliters RT reaction was amplified by PCR in a total volume of 50µL, as above.Gel electrophoresis and DNA purification PCR or RT-PCR products were analyzed by electrophoresis on 4% NuSieve agarose (FMC Bioproducts) gel and visualized by ethidium bromide staining. Before reamplification, DNA fragments were excised from the gel and purified using a QIAGEN DNA purification kit.Direct sequencing of genomic DNA Dideoxy sequencing was performed using an ABI PRISM Dye Terminator Cycle Sequencing Ready Reaction Kit (Perkin Elmer) and was analyzed using an automated sequencer ABI PRISM (model 377, version 2.1.1; PE Applied Biosystems).Single-strand conformation polymorphism and heteroduplex analysis For single-strand conformation polymorphism (SSCP), 5µL PCR product was denatured for 5 minutes at 96°C in 10 µL 95% formamide loading buffer and placed on ice slurry. Then 5 µL sample was loaded onto an MDE polyacrylamide gel (FMC BioProducts) and electrophoresed at room temperature for 16 to 24 hours at 250 V. For heteroduplex analysis, the sample was denatured at 96°C for 2 minutes and allowed to cool to room temperature for 1 hour for duplex formation. Immediately before loading the sample onto the gel, 30% glycerol loading buffer (2 µL) was added to each sample.
Identification of clonal patients Patterns of X-chromosome inactivation consistent with clonal hemopoiesis have been observed in variable proportions of female patients with AA.18,25-28 Most studies have used DNA methylation as a surrogate marker of X-inactivation, but methylation may not always correlate with activation status. We therefore studied expression at the RNA level of the silent polymorphism at nt.1311 of the G6PD gene29 using an RT-PCR method (Mortazavi et al, manuscript submitted). To avoid the inclusion of patients with extreme lyonization, we used a stringent criterion of greater than 95% expression of 1 allele to define a clonal pattern. Thirty-eight percent of informative patients showed a clonal pattern, which was significantly higher than among controls, and there was a trend toward longer duration of disease and older age in the clonal group (data not shown). Nine female patients with clonal patterns of X-chromosome inactivation were included in this study; 18 patients with a PNH clone detectable by flow cytometry and 3 additional patients in whom MDS developed during the course of the study were also includedAmplification of the N-RAS gene DNA was extracted from granulocytes and lymphocytes, and 2 regions of the N-RAS gene spanning either codons 12 and 13 or codon 61 were separately amplified by PCR. Amplification of exon 1 containing codons 12 and 13 produced a 109-bp DNA fragment, and amplification of exon 2 containing codon 61 produced a 103-bp DNA fragment (data not shown).Detection of point mutations by ASO hybridization To assess the prevalence of activating mutations of the N-RAS proto-oncogene, PCR products were transferred to 3 replicate Hybond NFP nylon filters by slot blotting and were probed for wild-type and each possible mutant sequence at codons 12, 13, or 61 of the human N-RAS gene by ASO hybridization. In the first instance, combinations of 3 or more oligonucleotide probes specific for each possible activating mutation at codons 12, 13, and 61 were used.
Detection of PIG-A gene mutation for patient 12
Aplastic anemia and PNH have been considered preleukemic conditions
because of their significant risk for transformation to clonal
disorders.30,31 Reports from single and multicenter studies
have shown a 10% to 26% occurrence of MDS and acute leukemia in
patients 10 to 20 years after immunosuppressive therapy
for AA.1,2,4-6 Cytogenetic analysis at diagnosis reveals
that a few patients with AA have clonal abnormalities, but most are karyotypically normal.32,33 However, studies using
X-chromosome inactivation methods show that some patients with AA may
have monoclonal patterns in peripheral blood cells at
presentation18 or later in the course of the
disease.18,27,28 Therefore, it is possible that clonal
evolution began during AA. There are alternative possible explanations
for selective X-chromosome inactivation, including stem cell ablation,
loss of stem cell heterogeneity,34 and selection for
advantageous alleles on the active X-chromosome,35 but in
the context of selecting patients at risk for clonal evolution, they
all imply extreme hematopoietic stress.
The authors thank J. C. W. Marsh for helpful discussions, R. Chopra for
assistance with DNA extraction, and all their normal controls for the
generous donation of blood.
Submitted May 17, 1999; accepted September 20, 1999.
Supported by a grant from the United Kingdom Leukaemia Research Fund
and by a research studentship from the Islamic Republic of Iran.
Reprints: T. R. Rutherford, Department of Haematology, St.
George's Hospital Medical School, Cranmer Terrace, London SW17 0RE,
United Kingdom; e-mail: trutherf{at}sghms.ac.uk.
The publication costs of this
article were defrayed in part by
page charge payment. Therefore,
and solely to indicate this fact,
this article is hereby marked
"advertisement"
in accordance with 18 U.S.C.
section 1734.
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