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Blood, Vol. 95 No. 3 (February 1), 2000:
pp. 1100-1105
TRANSPLANTATION
From the Laboratory of Experimental Hematology, Department of
Hematology, Leiden University Medical Center, Leiden, The Netherlands.
Graft rejection after histocompatibility locus antigen
(HLA)-identical stem cell transplantation results from the recognition of minor histocompatibility antigens on donor stem cells by
immunocompetent T lymphocytes of recipient origin. T-lymphocyte clones
that specifically recognize H-Y epitopes on male target cells have been
generated during graft rejection after sex-mismatched transplantation.
Previously, 2 human H-Y epitopes derived from the same SMCY gene have
been identified that were involved in bone marrow graft rejection. We
report the identification of a new male-specific transplantation antigen encoded by the Y-chromosome-specific gene DFFRY. The
DFFRY-derived peptide was recognized by an HLA-A1 restricted CTL clone,
generated during graft rejection from a female patient with acute
myeloid leukemia who rejected HLA-phenotypically identical bone marrow from her father. The identification of this gene demonstrates that at
least 2 genes present on the human Y-chromosome code for male-specific
transplantation antigens.
(Blood. 2000;95:1100-1105)
Histocompatibility locus antigen (HLA)-identical bone
marrow transplantation (BMT)1 is frequently complicated by
graft-versus-host disease (GVHD) or graft rejection. Each complication
is thought to be initiated by HLA-restricted T lymphocytes that
recognize minor histocompatibility (mH) antigens.1-4 These
polymorphic antigens, which differ between donor and recipient, are
peptides derived from intracellular proteins. The male-specific H-Y
antigens are the most extensively studied mH antigens. The involvement of H-Y antigens in transplant rejection was identified by the observation that, within an inbred mouse strain, females rapidly rejected primary syngeneic male skin grafts.5,6 In humans, female patients who undergo transplantation with male bone marrow have
a higher risk for graft rejection than when they undergo transplantation with marrow of female origin.1,7-9 In mice and humans, H-Y-specific T-lymphocyte clones could be generated from
the peripheral blood of patients during GVHD or graft rejection after
sex-mismatched transplantation.1,10,11 These H-Y-specific T-lymphocyte clones can be used as tools to identify H-Y antigens and
the corresponding Y-specific genes.
The first identified gene encoding for an H-Y antigen was SMCY. In
mouse, the gene was identified by transfection of a series of cosmids
of the short arm of the Y chromosome into cells expressing the
appropriate restriction molecules. These cells were then tested for
their ability to stimulate an H-Y epitope-specific T-lymphocyte clone.
Transfection of 1 cosmid encoding for the SMCY gene resulted in stimulation of the H-Y-specific T-lymphocyte
clone.10 In humans, 2 H-Y antigens were identified by
analysis of eluted peptides from male target cells using a
combination of microcapillary liquid chromatography-electrospray
ionization mass spectrometry with T-cell epitope reconstitution assays.
Both H-Y antigens, recognized by an H-Y-specific HLA-B7-restricted
cytotoxic T-lymphocyte (CTL) clone and by an HLA-A2 restricted CTL
clone, were encoded by different peptides from the SMCY
protein.12,13
Although SMCY encodes for most H-Y antigens identified to date, genetic
mapping of the mouse Y chromosome suggested that at least 2 and up to 5 distinct loci, including SMCY, encode H-Y antigens.14
Recently, a systematic search of the nonrecombinant region of the human
Y chromosome identified 3 known and 5 novel Y-specific genes with a
ubiquitous tissue expression.15 Each gene had a homologue
on the X chromosome encoding a very similar but nonidentical protein
isoform. The amino acid sequence identity of the X-Y isoforms varied
from 85% to 97%. Because all these ubiquitously expressed Y-specific
genes have sufficient polymorphisms to generate male-specific peptides,
they are all potential candidates to encode H-Y antigens. The
identification of UTY as a mouse H-Y antigen-encoding gene confirmed
the hypothesis that H-Y antigen is the product of more than 1 gene on
the Y-chromosome.16 In humans, however, H-Y
antigens published thus far are derived from the SMCY
gene.12,13
In 1990, we reported a detailed analysis of a female patient with acute
myeloid leukemia (AML) who rejected a bone marrow graft from her
HLA-phenotypically identical father. Before transplantation and during
graft rejection, a strong cellular recipient antidonor cytotoxic
reactivity could be demonstrated. This reactivity was directed against
mH antigens, including a male-specific antigen. Cloning of this
recipient-antidonor response resulted in the generation of a CTL clone
shown to be H-Y specific and HLA-A1 restricted.1
In this study, we report the identification of a novel male-specific
transplantation antigen, recognized by the HLA-A1 restricted CTL clone.
The H-Y antigen presented by HLA-A1 is the 9-residue peptide IVDCLTEMY
derived from DFFRY, a gene coding for a new male-specific
transplantation antigen. The identification of this H-Y antigen
demonstrates that the human H-Y antigen involved in graft rejection may
consist of the products of more than 1 gene on the human Y-chromosome.
CTL and cell lines
Cloning of Y-specific genes
Cloning of subgenic fragments of the DFFRY2 gene
Cloning of DFFRY2 minigenes DFFRY2 minigenes were generated by hybridization of 2 oligo nucleotides, followed by incorporation into the BamHI and HindIII site of PCR3.1. For the generation of minigene 14AA, we used the following oligo nucleotides 5'3': AGCTTCACCATGCTCAAACAGATAGTAGACTGTTTGACTGAAATGTATTACTAG and GATCCTAGTAATACATTTCAGTCAAACAGTCTACTATCTGTTTGAGCATGGTGA.Transfection of HeLa cells and screening of transfectants Y-specific cDNA was transfected into HeLa cells by the DEAE-dextran-chloroquine method as described.20 The day before transfection, HeLa cells were seeded in 96-well, flat-bottom microtiter plates at 15 000 cells/well in 100 µL complete culture medium. Before transfection, medium was discarded and replaced by 45 µL DEAE-dextran/DNA mixture. This mixture was prepared for duplicate transfections in 96-well V-bottom microtiter plates by sequentially adding 98 µL RPMI-1640 supplemented with 10% decomplemented NuSerum IV (Collaborative Biomedical Products, Bedford, MA) containing 0.3 mg/mL DEAE-dextran (Sigma Chemical) and 100 µmol/L chloroquine, 1 µL TE containing 200 ng Y-specific cDNA in plasmid PCR3.1 and 1 µL (TE)10 mmol/L Tris, 1 mmol/L EDTA, pH 7.4, containing 200 ng plasmid pcDNAI/AMP-A1 (plasmid pcDNAI/AMP containing the HLA-A1 gene) or no HLA-A1 construct as a control. If the stably HLA-A1-transduced HeLa/HLA-A1 cells were used, no plasmid pcDNAI/AMP-A1 was added to the DEAE-dextran/DNA mixtures. The HeLa cells were incubated for 4 hours at 37°C, after which the DEAE-dextran/DNA was discarded and replaced by 80 µL phosphate-buffered saline containing 10% dimethyl sulfoxide. After 2 minutes at room temperature, phosphate-buffered saline-dimethyl sulfoxide was replaced by 200 µL complete culture medium. Transfected HeLa cells were incubated for 48 hours at 37°C. After removing the medium, 4000 HLA-A1 HY was added in 200 µL RPMI-1640 containing 10% pooled human serum and 300 IU IL-2 per milliliter. After 24 hours, the tumor necrosis factor (TNF) content in 50 µL supernatant was determined by adding it to 50 µL complete culture medium containing 50 000 WEHI-164 clone 13 cells, on which TNF has a cytolytic effect.21 After 18 hours, 10 µL cell proliferation reagent WST I (Boehringer Mannheim GmbH) was added, and the TNF concentration was calculated in comparison with recombinant TNF standards measured in the same assay.Protein synthesis The Y-specific genes were transcribed and translated using wheat germ extract and 3H-labeled leucine according to the manufacturer's procedure as is described in the TNT T7-coupled transcription/translation system (Promega, Madison, WI). The 3H-labeled proteins were separated by 12% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) for 2 hours. After fixation in a 10% methanol/10% glacial acetic acid solution for 30 minutes, amplification of radiation by the 3H-labeled proteins was achieved by using amplified fluorographic reagent (Amersham). Then the gel was dried for 2 hours at 65°C, and the proteins were visualized by autoradiography. The molecular weights of the proteins were determined by using kaleidoscope prestained protein standards (Bio-Rad Laboratories, Hercules, CA).Peptide synthesis and peptide recognition assays Peptides were synthesized by solid-phase fluorenylmethoxy-carbonyl (FMOC) chemistry and Wang resins on an AMS 422 multiple peptide synthesizer (Gilson Medical Electronics, Middletown, WI) and characterized by mass spectrometry. Standard 51Cr-release assays were used to determine lysis of target cells. EBV-LCL target cells were labeled with 100 µCi Na51CrO4. After 1 hour of incubation at 37°C, the cells were washed 3 times with RPMI supplemented with 2% fetal calf serum. Then 2000 Na51CrO4 labeled EBV-LCL cells/well were plated in a 96-well, V-bottom microtiter plate in 100 µL RPMI-1640 + 10% pooled human serum containing various concentrations of peptide. After 1 hour of incubation at 37°C, 20 000 CTLs were added in 100 µL RPMI-1640 + 10% pooled human serum. 51Cr-release was measured after incubation at 37°C for 4 hours.
Cloning of Y-specific genes The PCR primers used, as shown in Table 1, were designed to amplify only the Y-specific gene and not the X-homologue. Restriction and sequence analysis of amplified Y-specific cDNA confirmed the Y specificity (data not shown). To determine whether the cloned Y cDNA was transcribed and translated appropriately, we performed an in vitro transcription/translation assay in which the Y-specific proteins were labeled with 3H and visualized on an autoradiogram after separation by SDS-PAGE, as shown in Figure 1. All proteins showed the molecular weight (MWt) as deduced from their primary sequence, with the exception of ZFY. This protein had a MWt of 125 kd, whereas the sequence deduced that the MWt was 90 kd. However, DNA sequence analysis of both the 3' and 5' sites of ZFY revealed the correct ZFY DNA sequence, suggesting that this protein had undergone posttranslational modification.
Identification of the gene encoding for the HLA-A1-restricted H-Y epitope To determine whether any of the Y-specific genes encoded the HLA-A1-restricted H-Y epitope, the cloned Y-cDNA was transfected to the HeLa cells stably transfected with HLA-A1 (HeLa/HLA-A1) or cotransfected with HLA-A1 cDNA to HeLa cells. As shown in Figure 2, transfection of DFFRY2 cDNA resulted in a significant amount of TNF production by HLA-A1 HY, whereas transfection of all other Y-genes induced no TNF release. To investigate whether this TNF release by HLA-A1 HY was HLA-A1 restricted, the DFFRY2 cDNA was transfected with and without HLA-A1 into HeLa cells. No significant TNF release by HLA-A1 HY took place when the DFFRY2 gene was transfected in the absence of the HLA-A1 molecule (TNF production 3.9 ± 1.5 pg/mL).
Localization of the HLA-A1 associated H-Y epitope in the DFFRY gene A genetic approach was used to localize the DFFRY sequence coding for the H-Y epitope. First, deletion mutants were obtained by digestion with restriction enzymes PstI and XbaI, resulting in a deletion at the 3' site of the DFFRY2 gene of 444 bp (DFFRY2/PstI) and 1877 bp (DFFRY2/XbaI), respectively (Figure 3). As is demonstrated in Figure 4, TNF production by HLA-A1 HY was abolished when the CTL clone was stimulated with HeLa transfected with these DFFRY2 deletion mutants and HLA-A1. We concluded that the HLA-A1-associated H-Y antigenic peptide was encoded by the sequence of the DFFRY gene located between positions 4433 and 4828, 30 bp after the starting base of DFFRY3. To identify the H-Y epitope, the 4433 to 4828 region of the DFFRY gene was screened for peptides that would bind to HLA-A1 and at least would differ for 1 amino acid compared to the X-homologue. The DFFRY region 4561 to 4587 or 4590 codes for a HLA-A1-binding nonapetide and decapeptide, respectively. To determine whether this region indeed coded for the H-Y epitope, 2 pairs of oligo nucleotides were synthesized. Each pair of oligo nucleotides consisted of 2 complementary single-stranded DNA, which formed double-stranded DNA minigenes with a BamHI site and HindIII site after hybridization. These minigenes were cloned into the BamHI/HindIII-digested PCR3.1 expression vector. Minigene 14AA codes for the peptide MLKQIVDCLTEMYY (DFFRY position 4552-4590) and minigene 16AA for MKQIVDCLTEMYYMGT (DFFRY position 4555-4599) (Figure 3). Both minigenes were transfected into HeLa/A1 or cotransfected with HLA-A1 into HeLa. As is demonstrated in Figure 5, both minigenes induced TNF production by HLA-A1 HY, indicating that they encoded the H-Y epitope. The TNF production was abolished when no cotransfection of the HLA-A1 molecule into HeLa cells was performed.
Identification of the HLA-A1 associated H-Y epitope The nonapeptide IVDCLTEMY and the decapeptide IVDCLTEMYY, encoded by the minigenes, were synthesized and loaded at various concentrations on female HLA-A1-positive EBV-LCL cells, derived from the original patient who rejected her male bone marrow graft. The X-homologues IVDSLTEMY and IVDSLTEMYY were used as controls. Recognition of the peptide-loaded EBV-LCL cells by the CTL clone HLA-A1 HY was determined in a 51Cr-release assay. As is shown in Figure 6, the IVDCLTEMY-loaded EBV-LCL cells were efficiently killed by HLA-A1 HY with half-maximal target cell lysis at a peptide concentration of 1 ng/mL, whereas the IVDCLTEMYY-loaded EBV-LCL cells were only killed at high peptide concentrations. Neither X-homologue peptide was recognized by HLA-A1 HY.
Graft rejection and GVHD after HLA-identical stem cell transplantation are thought to result from the recognition of mH antigens by immunocompetent T lymphocytes from recipient or donor origin, respectively.1,4 The involvement of male-specific mH antigens in graft rejection was identified by the observation that female patients who underwent transplantation with HLA-phenotypically identical male bone marrow had a higher risk for graft rejection than those who underwent transplantation of bone marrow with HLA-phenotypically identical female origin.9 T-lymphocyte clones specifically recognizing male target cells could be generated during graft-rejection after sex-mismatched transplantation, and can be used as tools to identify H-Y antigens and the corresponding Y-specific genes.11,22
Submitted August 23, 1999; accepted September 30, 1999.
Supported by the Dutch Cancer Society (grant RUL 94-803) and the J. A. Cohen Institute for Radiopathology and Radiation Protection.
Reprints: J. H. Frederik Falkenburg, Leiden University Medical Center, Department of Hematology, C2-R-140, P.O. Box 9600, 2300 RC Leiden, The Netherlands; e-mail: falkenburg{at}hematology.azl.nl.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
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