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Blood, Vol. 95 No. 4 (February 15), 2000:
pp. 1138-1143
PLENARY PAPER
From the Division of Human Genetics, Department of Forensic
Medicine, Kurume University School of Medicine, Kurume; Transfusion
Information Department, The Japanese Red Cross Central Blood Center,
Tokyo; Department of Gynaecology, Masuda Red Cross Hospital, Masuda;
and Department of Medicine, Tokyo Metropolitan Hiroo Hospital, Tokyo,
Japan.
Two anhaptoglobinemic patients showing anaphylactic transfusion
reactions by antihaptoglobin antibody were found. Southern blot
analysis indicated that 2 patients were homozygous for the deleted
allele of the haptoglobin gene (Hpdel)
as reported previously. We have identified the junction region of the
deletion from genomic DNA of 1 patient using cassette-mediated polymerase chain reaction (PCR). Then, the deleted region
from the 5' breakpoint to the promoter region of the Hp
was amplified from genomic DNA of a control individual using PCR. DNA
sequence analysis of these regions indicated that the 5'
breakpoint of the Hpdel allele was located
5.2 kilobase (kb) upstream of exon 1 of the Hp and the 3'
breakpoint was positioned between 52 and 53 base pair (bp) upstream of
exon 5 of the haptoglobin-related gene. There was no significant
homology between the DNA sequences flanking the 5' and 3'
breakpoints, except for a 2-bp (TG) identity. To examine the gene
frequency, we have developed a simple PCR method to detect the gene
deletion. We found 8, 16, and 17 Hpdel
alleles in 157 Koreans, 523 Japanese, and in 284 Chinese, respectively, but did not find the Hpdel in 101 Africans
or in 100 European-Africans. The incidence of individuals
homozygous for the Hpdel allele was
therefore expected to be 1/4000 in Japanese, 1/1500 in Koreans, and
1/1000 in Chinese. This incidence is higher than that of IgA deficiency
in Japanese. More attention should be paid on haptoglobin deficiency
and antihaptoglobin antibody as the cause of transfusion-related
anaphylactic reactions in Asian populations.
(Blood. 2000;95:1138-1143)
Haptoglobin (Hp) is a hemoglobin-binding polymorphic
plasma glycoprotein present in all vertebrates.1 Heritable
normal variations in humans were first reported by Smithies and
Walker,2 and there are 3 common genetic haptoglobin
phenotypes, Hp1, Hp2, and Hp2-1, which are determined by a pair of
codominant alleles We have encountered 2 anhaptoglobinemic patients with anti-Hp antibody,
who suffered from severe anaphylactic shock after infusion of blood
products.14,15 Briefly, the first was a 33-year-old woman
(NK) in the 31st week of her first pregnancy. She was hospitalized for
threatened premature delivery due to chronic polyhydroamnios. When she
developed edema in her extremities with increased amniotic fluid and
decreased serum albumin, 25% albumin solution was infused. After
receiving several drops, she exhibited severe anaphylactic reactions,
and immediate intravenous administration of corticosteroids improved
her symptoms. The second case was a 94-year-old woman (SN) with
myelodysplastic syndrome. She was transfused red blood cells 3 times
and platelet-concentrate once during a 7-month period without any
symptoms. However, when she was transfused platelet-concentrate 1 month
later, she suffered from anaphylactic reactions, which responded to
corticosteroids. She had borne 2 children without any trouble when she
was young. Both these patients showed anti-Hp antibody and no
detectable Hp in their sera.14,15
In the current study, we have determined that these 2 patients were
homozygous for the Hpdel allele by Southern
blot analysis. The junction region of the Hpdel allele was amplified by
cassette-mediated polymerase chain reaction (PCR) and sequenced. We
then developed a simple method to detect this deletion by PCR
amplification for screening anhaptoglobinemic individuals to examine
the gene frequency in various populations.
DNA preparations from patients and healthy volunteers
Southern blot analysis
PCR amplification of the junction region of Hpdel allele A Marathon cDNA amplification kit (Clontech Japan, Tokyo, Japan) was used for isolation of the junction region of the Hpdel. Genomic DNA (5 µg) from EB virus-transformed lymphocytes of the patient (NK) homozygous for the Hpdel allele was digested with 1 of several endonucleases (50 U) (DraI, EcoRV, PvuII, RsaI, and HaeIII) and ligated with a Marathon cDNA adaptor (Clontech). Then, the junction region of the deletion was amplified using cassette-mediated PCR. Because there are AP1 and AP2 sequences within the adaptor, we used the gene-specific primers (Hpr-first and Hpr-nest) as downstream primers and the AP1 and AP2 primers (Clontech) as upstream primers. The Hpr-first primer 5'-GGG CTT CCC ACA TAC TGT CAA GGA G-3', within intron 4 and exon 5 of the Hpr, and the AP1 primer were used for the first PCR, and then nested PCR was performed using the Hpr-nest primer 5'-CCA CAT ACT GTC AAG GAG AGC AAG A-3', and the AP2 primer. The temperature profile of PCR for amplification of the junction region of the Hpdel was at 94°C for 1 minute, followed by 25 cycles of denaturing at 98°C for 10 seconds, and annealing and extension at 68°C for 4 minutes. PCR amplifications were performed using 2.5 units of LA Taq polymerase (Takara, Shiga, Japan) in a 25 µL LA Taq buffer containing 5 pmol of each primer, 2.5 mmol/L MgCl2 and 400 µmol/L dNTP.PCR amplification of the deleted region The region between an upstream region of the 5' breakpoint of the deletion of the Hpdel and the promoter region of the haptoglobin gene was amplified from genomic DNA of a control individual using primers Hp-del-U (5'-CTT TAT GGC ACT GGG GAA CAA GCA TTT TG-3') (Figure 2) and Hp-promoter-L (5'-CCC ATC AAC AGG AGG AAG GGT CAA TAC TGC-3', within a promoter region of the Hp).13 The terms "U" and "L" indicate upper and lower primers, respectively. The temperature profile was at 94°C for 1 minute, followed by 30 cycles of denaturing at 98°C for 10 seconds, annealing at 60°C for 30 seconds and extension at 72°C for 5 minutes. PCR amplification was performed using 2.5 units of LA Taq polymerase (Takara) in a 25 µL LA Taq buffer containing 5 pmol of each primer, 2.5 mmol/L MgCl2 and 400 µmol/L dNTP.PCR amplification of the junction region of the Hpdel allele and exon 1 of the Hp To amplify the Hpdel allele, PCR was performed in 25 µL Ex Taq buffer containing 5 pmol of primers Hp-del-U and H-del-L (5'-CAG GAA GAG ATT TTT AGC CGT GGT CAG CAG-3', within exon 5 of the Hpr), 1 unit of Ex Taq DNA polymerase and 200 µmol/L dNTP. The temperature profile was at 94°C for 1 minute, followed by 35 cycles of denaturing at 98°C for 10 seconds, annealing at 60°C for 30 seconds and extension at 72°C for 1 minute. As an amplification control, the exon 1 of the haptoglobin gene was coamplified with 5 pmol of primers Hp-Ex1-U (683 ~ 707 bp from the ATG initiation codon of the Hp) and Hp-Ex1-L (1135 ~ 1159 bp) as described previously.10DNA sequencing PCR products purified by a suprec-02 centrifugation tube (Takara) were directly sequenced in both directions using each PCR primer or several internal sequences (not shown) as a sequence primer using a Bigdye Terminator Cycle Sequencing Reaction Kit and analyzed using an ABI PRISM 310 genetic analyzer (Perkin Elmer Japan ABI).
Characterization of the haptoglobin gene cluster of patients with anti-Hp antibody The haptoglobin gene cluster of 2 patients with anti-Hp antibody was analyzed by Southern blot analysis with cDNA probes coding for or
chain of Hp. Figure 1
shows typical hybridization results. When genomic DNA was digested by
SacI, a 3.4-kb DNA fragment corresponding to the Hp and
a 2.4-kb signal corresponding to the Hpr were identified by an
Hp cDNA probe in a control individual (lane N). In addition to these 2 bands, an unexpected band of 7.5 kb was found in a hypohaptoglobinemic individual who was previously shown to be heterozygous for the Hpdel allele (lane H).
Only the 7.5-kb band was found in 2 anhaptoglobinemic patients who had
anti-Hp antibody (lane A). When genomic DNAs of the 2 patients were
digested by XbaI, and by HindIII, only unexpected band
of 6.5 kb and of 4.4 kb, corresponding to the Hpdel, was detected by the Hp cDNA
probe, respectively, and no signal was detected by the Hp cDNA probe (not shown). In addition, we failed to amplify exons 1 ~ 4 of the Hp using PCR from genomic DNA of the patients. These
results indicated that the 2 patients with anti-Hp antibody were
homozygous for the Hpdel allele, which is
the sole null allele of the Hp reported to date.10
Identification of the junction region of the Hpdel Previous mapping results suggested that the 3' end of the gene deletion occurred within a 284-bp stretch between the AatI site within intron 4 and the BamHI site in exon 5 of the Hpr. To identify the junction region of the Hpdel allele, cassette-mediated PCR was performed using several endonuclease-digested libraries constructed from genomic DNA of the EB virus-transformed lymphocytes of 1 patient (NK). The longest PCR product (2.5 kb) was obtained from DraI library. DNA sequence analysis of the 2.5-kb PCR product indicated that the sequence of 2380 bp of 5' region of the product has not been identified previously, and that 60 bp of 3' region of the product was identical to the intron 4 and exon 5 of the Hpr.13 The DNA sequence between 781-bp upstream of the 5' breakpoint and 228-bp downstream of the 3' breakpoint of the Hpdel allele is shown in Figure 2. BLAST searches (http://www.ncbi.nlm.nih.gov/BLAST/) indicated that the 5' flanking region of the 5' breakpoint contained sequences similar (more than 90% homologous) to the 5' flanking sequence of the New World monkey Hp gene.
PCR amplification and sequencing of the nucleotides between the 5' breakpoint of the Hpdel and the promoter region of the Hp Because the DNA sequence of an upstream region of the 5' breakpoint of the Hpdel was highly homologous with the 5' flanking region of the Hp gene of black-handed spider monkey (Ateles geoffroyi), we tried to amplify a region between the 5' breakpoint of the deletion and the promoter region of the Hp from genomic DNA of a control individual. A 4.5-kb fragment was amplified by the Hp-del-U and Hp-promoter-L primers, and DNA sequence analysis indicated that this fragment was the 5' flanking region of the Hp gene. The 5' breakpoint of the deletion located at about 5170-bp upstream of the 5' end of exon 1 of Hp, and the 3' breakpoint was positioned between 52- and 53-bp upstream of exon 5 of the Hpr (Figure 3A). From these results, the size of the deletion of the Hpdel allele is estimated to be 28 kb. The DNA sequences flanking the 5' and 3' breakpoints showed no significant DNA sequence homology in the junction region of the deletion, except for 2 bases (TG) (Figure 3B). Computer analysis of the 6540-bp sequence obtained in this study by the Repeat Masker program through the Washington University Human Genome Center (http://ftp.genome.washington.edu/cig-bin/) identified that about 70% of this sequence were repetitive.
Screening and identification of the Hpdel allele using PCR For screening for the Hpdel, we amplified the Hpdel allele using conventional PCR with primers (Hp-del-U and Hp-del-L), encompassing the junction of the Hpdel (Figure 2). As shown in Figure 4, a 315-bp DNA fragment was amplified from genomic DNA of individuals homozygous or heterozygous for the Hpdel, whereas no DNA fragment was amplified from genomic DNA of a control individual. Direct DNA sequencing of this 315-bp PCR product from the 2 patients indicated the specific amplification of the junction region of the breakpoints. Homozygosity for the Hpdel allele was confirmed by the absence of amplified product of exon 1 of the Hp. These PCR results were consistent with those from Southern blot analysis in 3 individuals homozygous and 10 individuals heterozygous for the Hpdel allele.
Southern blot analysis in this study indicated that the 2 patients
with anti-Hp antibody were homozygous for the
Hpdel allele previously
identified.10 The results indicated that the large
haptoglobin gene deletion was the causal mutation for the
anhaptoglobinemia, resulting in the production of antibody after blood
transfusions. We have determined that the 5' breakpoint of the
gene deletion was near an LTR-like sequence that was located about
5.2-kb upstream of exon 1 of the Hp. From these results, the
size of deletion was calculated to be 28 kb. In this study, we have
determined the nucleotide sequence of the 5' flanking region of
the Hp (from We thank all members of the 2 families for consenting to the study and
giving blood samples. We also thank Dr Ernette D. du Toit (Department
of Immunology, Medical School, Cape Town, South Africa) and Dr Doo-Sung
Kim (Korean Red Cross Central Blood Center, Seoul, Korea) for providing
blood samples. We thank Osaka Red Cross Blood Center for collecting
blood samples of members of NK family.
Submitted August 23, 1999; accepted October 13, 1999.
Supported in part by Grants-in-Aid for Scientific Research from the
Ministry of Education, Science, Sports, and Culture of Japan, and a
grant from the Uehara Memorial Foundation.
Nucleotide sequence data reported in this article have been deposited
in the DDBJ/EMBL/GenBank nucleotide sequence databases with the
accession numbers AB025320 (the junction region of the
Hpdel) and AB025321 (the 5'
flanking region of the Hp). The accession number for the
5' flanking region of the Hp gene of New World monkey
(Ateles geoffroyi) is U04852.
Reprints: Hiroshi Kimura, Department of Forensic
Medicine, Kurume University School of Medicine, Kurume 830-0011, Japan; e-mail: hkimura{at}med.kurume-u.ac.jp.
The publication costs of this
article were defrayed in part by
page charge payment. Therefore,
and solely to indicate this fact,
this article is hereby marked
"advertisement"
in accordance with 18 U.S.C.
section 1734.
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