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Blood, Vol. 95 No. 5 (March 1), 2000:
pp. 1797-1803
NEOPLASIA
Division of Oncology, Department of Medicine, Department of Health
Research and Policy, and Department of Pathology, Stanford University
Medical Center, Stanford, CA; Department of Internal Medicine and
Department of Pathology, University of Nebraska Medical Center, Omaha,
NE.
Diffuse large B-cell lymphoma (DLBCL) is a common type of
non-Hodgkin's lymphoma (NHL) that is highly heterogeneous from both clinical and histopathologic viewpoints. The immunoglobulin (Ig) heavy
(H) chain variable region genes were examined in 71 patients with
untreated primary DLBCL. Fifty-eight potentially functional VH genes were detected in 53 DLBCL cases; VH
genes were nonfunctional in 9 cases and were not detected in an
additional 9 cases. The use of VH gene families by DLBCL
tumors was unbiased without overrepresentation of any particular
VH gene or gene family. Analysis of Ig mutations in
comparison to the most closely related germline gene disclosed mutated
VH genes in all but 1 DLBCL case. More than 2% difference from the most similar germline sequence was detected in 52 potentially functional and the 8 nonfunctional VH gene sequences,
whereas less than 2% difference from the germline sequence was
observed in 3 VH gene isolates. Only 3 VH gene
isolates were unmutated. No correlation was found between
VH gene use, mutation level, and International Prognostic
Index (IPI) or survival. Six of 8 tested tumors showed evidence of
ongoing somatic mutations. Evidence for positive or negative antigen
selection pressure was observed in 65% of mutated DLBCL cases. Our
findings indicate that the etiology and the driving forces for clonal
expansion are heterogeneous, which may explain the well-known clinical
and pathologic heterogeneity of DLBCL.
(Blood. 2000;95:1797-1803)
The immunoglobulin (Ig) heavy (H) chain variable region
is formed during normal B-cell ontogeny by an ordered process of Ig gene rearrangement leading to the assembly of distinct variable (V),
diversity (D), and joining (J) gene segments. This phenomenon is known
as VDJ recombination.1 A single VH gene is
chosen from the available VH repertoire consisting of
approximately 51 potentially functional genes that are grouped into 7 structurally related families on the basis of at least 80% nucleotide
sequence homology.2,3 The large diversity among the Ig H
chain variable regions is generated by combinatorial permutation of
different V, D, and J gene segments and by addition or deletion of
short coding sequences at the VD and DJ joints. An additional process of sequence diversification by somatic hypermutation following antigen
encounter occurs in B cells proliferating within the microenvironment of the germinal center (GC).4,5 Although the process of
somatic hypermutation has an element of randomness, antigen selection tends to result in a conservation of Ig framework regions (FR) and in a
clustering of replacement mutations within the complementary determining regions (CDR).6-8 Therefore, somatically
mutated variable region genes are a hallmark of GC B cells and their descendants.
The majority of B-cell lymphomas contain Ig gene rearrangements and
usually express a unique clonal surface Ig that provides a specific
tumor marker. Analysis of lymphoma variable region genes coding for the
variable region of tumor Ig may have important implications for tumor
diagnosis, monitoring, and treatment. Examination of variable region
mutations in B cell tumors may help to trace the developmental stage at
which neoplastic transformation has occurred and assign these cells to
their normal counterparts. Moreover, VH gene analysis may
reveal pathogenic aspects of B-cell lymphomas, including possible bias
in V-gene usage. For instance, preferential V-gene usage might
implicate a role for a superantigen, which by binding to surface Ig
receptor via unmutated FR may drive B-cell
proliferation.9,10
Several groups, including our own, have analyzed Ig H chain variable
region in small cohorts of patients with diffuse large B-cell lymphoma
(DLBCL).11-16 The results of these studies are inconsistent. Biased VH gene use with overrepresentation of
VH 4 gene family and particularly of VH 4-34 gene was observed in 3 of the 6 reported studies,11,14,15
whereas the other 3 studies12,13,16 reported an unbiased
VH gene use in DLBCL. Extensive somatic mutations in the
VH genes were observed in tumor samples from DLBCL patients in all these studies. However, the issue of ongoing somatic mutation in
DLBCL is controversial, some studies demonstrating no intraclonal variation 11,17-20 and others showing ongoing
hypermutation, similar to follicular lymphoma (FL).21-23
To further elucidate these issues VH gene sequences from
tumor samples were examined in a large cohort of untreated patients with DLBCL.
Patient material
Tissue section analysis
RNA isolation and reverse transcription-polymerase chain
reaction (RT-PCR)
Sequencing and cloning of PCR products Direct DNA sequencing of PCR amplicons was performed on an 373 automatic DNA sequencer (Applied Biosystems, Foster City, CA) using ABI Prism Big Dye Terminator Kit (Perkin Elmer, Foster City, CA) as recommended by the manufacturer. The same primers used for the PCR were used for sequencing. The sequence was defined as clonal if identical CDR3 sequences were obtained from 2 independent PCR reactions. If direct DNA sequencing attempt of the PCR amplicon failed to recover an unambiguous sequence, the PCR amplicons were cloned into a TA-PCR cloning vector (Invitrogen). After the transformation of competent Escherichia coli (1 Shot INV F', Invitrogen)
and plating on selective agar (50 µg/mL of kanamycin, 40 µL of the 40 µg/mL of the X-gal), 10 to 12 white colonies were picked per sample and used in a second round of PCR. Identity of the products was
established by restriction digest and 3 to 6 amplicons were selected
for sequencing.
Analysis of intraclonal heterogeneity To evaluate for the presence of ongoing mutations in primary DLBCL, 8 specimens were examined by repeated cloning and sequencing of at least 15 molecular clones from each specimen. For evaluation of intraclonal heterogeneity, the following definitions were used: unconfirmed mutation a substitution mutation observed in only 1 of the
VH gene molecular clones from the same tumor specimen; confirmed
mutation a mutation observed more than once in the VH gene molecular
clones from the same tumor specimen.
Mutation analysis Sequence analysis was done using programs MacVector and Assembly Lign (Oxford Molecular Group, Campbell, CA). Sequences were aligned with germline sequences derived from Vbase database and DNA plot on the Internet. The VH gene sequences were compared with the germline genes with the highest homology and, accordingly, the number of somatic mutations was determined. Mutations at the last nucleotide position of the sequenced fragment were excluded from the mutational analysis because they might result from nucleotide deletion at the joining sites. Percent of sequence identity was calculated from the aligned sequences from the beginning of FR1 to the end of FR3.
VH gene use in DLBCL Reverse transcriptase-PCR using VH leader and JH consensus primers was performed in 71 patients with primary untreated DLBCL. In 3 (4.2%) patients an Ig VH gene PCR product could not be detected despite successful amplification of 2M that served as a control for
RNA-cDNA integrity. In 6 (8.4%) patients, multiple nonclonal bands, as
determined by subcloning and sequencing, were detected. Most probably
these bands derive from polyclonal reactive B cells infiltrating these
tumors. The failure to detect monoclonal VH gene sequences
in these 9 cases may result from somatic mutations in the region to
which PCR primers used in this study are designed to hybridize, thus
leading to lower amplification efficiency and possible false-negative
results. Alternatively, absence of Ig rearrangement, as was previously
reported in rare DLBCL cases,16,27 may explain the absence
of monoclonal VH gene sequences in some of these cases.
Immunohistochemistry
Intraclonal heterogeneity
Analysis of mutation pattern
The present study was undertaken to clarify the issues of
VH gene use and somatic mutation in DLBCL. For this
purpose, molecular analysis of the Ig VH region was performed in 71 untreated primary DLBCL patients
Supported by grants CA33399 and CA34233 from the USPHS-NIH. R.L. is an American Cancer Society Clinical Research Professor.
Reprints: Ronald Levy, Stanford University School of Medicine, Division of Oncology, M207, Stanford, CA 94305-5306.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
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I. S. Lossos, R. Tibshirani, B. Narasimhan, and R. Levy The Inference of Antigen Selection on Ig Genes J. Immunol., November 1, 2000; 165(9): 5122 - 5126. [Abstract] [Full Text] [PDF] |
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I. S. Lossos, A. A. Alizadeh, M. B. Eisen, W. C. Chan, P. O. Brown, D. Botstein, L. M. Staudt, and R. Levy Ongoing immunoglobulin somatic mutation in germinal center B cell-like but not in activated B cell-like diffuse large cell lymphomas PNAS, August 17, 2000; (2000) 180316097. [Abstract] [Full Text] |
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I. S. Lossos, A. A. Alizadeh, M. B. Eisen, W. C. Chan, P. O. Brown, D. Botstein, L. M. Staudt, and R. Levy Ongoing immunoglobulin somatic mutation in germinal center B cell-like but not in activated B cell-like diffuse large cell lymphomas PNAS, August 29, 2000; 97(18): 10209 - 10213. [Abstract] [Full Text] [PDF] |
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