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Blood, Vol. 95 No. 9 (May 1), 2000:
pp. 2838-2846
HEMATOPOIESIS
From SmithKline Beecham Pharmaceuticals, Collegeville, PA.
We have identified a novel regulatory erythroid kinase
(REDK) that is homologous to a family of dual-specificity
kinases. The yeast homolog of REDK negatively regulates cell division, suggesting a similar function for REDK, which is primarily localized in
the nucleus. REDK is present in hematopoietic tissues, such as bone
marrow and fetal liver, but the RNA is expressed at significant levels
only in erythroid or erythropoietin (EPO)-responsive cells. Two novel
forms of cDNA (long and short) for REDK have been isolated that
appear to be alternative splice products and imply the presence of
polypeptides with differing amino termini. The ratio of short-to-long forms of REDK increases dramatically in CD34+ cells
cultured with EPO, suggesting differing regulation and function for each form. REDK is predominantly found in
nuclear, rather than cytoplasmic, protein extracts, and
immunoprecipitated REDK is active in phosphorylating
histones H2b, H3, myelin basic protein, and other coimmunoprecipitated
proteins. Antisense REDK oligonucleotides promote erythroid colony
formation by human bone marrow cells, without affecting colony-forming
unit (CFU)-GM, CFU-G, or CFU-GEMM numbers. Maximal numbers of CFU-E and
burst-forming unit-erythroid were increased, and CFU-E displayed
increased sensitivity to suboptimal EPO concentrations. The data
indicate that REDK acts as a brake to retard erythropoiesis.
(Blood. 2000;95:2838-2846)
Hematopoietic cells develop continuously from primitive
multipotential stem cells to committed progenitor cells of various lineages. Through rounds of multiplication, progenitor cells generate amplified numbers of immature cells that can then develop into mature,
differentiated cells required for hematopoietic and immune functions.
This continual developmental process depends on balances between
proliferation, differentiation, and apoptosis to maintain the proper
numbers of functional cells in each lineage. Numerous lineage-restricted factors have been identified, such as
GATA-1,1 FOG1,2,3 GATA-2,4
tal-1,5-7 PU.1,8,9 and NF-E2,10 that mediate decision points for proliferation, survival, or
differentiation. The nature of other controlling factors,
however, remains largely undefined.
For erythropoiesis, subsets of transcription factors and hematopoietic
growth factors have been defined as important mediators. Critical
transcription factors include GATA-1, FOG1,
tal-1, and EKLF, the function of which can be modulated by
interactions with other proteins2,11-14 and by
phosphorylation15-17or other posttranslational
modifications.18 GATA-1 has been shown to be an essential
regulator of progenitor determination,1 and it contributes
to the survival and continuing development of erythroid
cells.19-21 In fact, there is evidence that the relative levels of GATA-1 and GATA-2 are
important.22,23 Other regulators of erythroid determination
remain to be discovered. Important hematopoietic growth factors include
erythropoietin (EPO), interleukin (IL)-3, granulocyte
macrophage-colony-stimulating factor (GM-CSF), and SCF. Blast-forming
unit-erythroid (BFU-E) is the earliest erythroid lineage-specific
progenitor, though it is not responsive to EPO.24,25 EPO
responsiveness is gained only on further maturation to colony-forming
unit (CFU)-erythroid (E) stage.25,26 However, EPO is not
required for final maturation of red blood
cells,27 even though it is necessary for the
terminal differentiation and survival of erythroid
cells.26,28
In this report we describe a novel human nuclear kinase that is
predominantly expressed in erythroid cells and that functions in
erythroid growth, differentiation, or both. Regulatory erythroid kinase
(REDK) is related to a recently recognized subfamily of dual-specificity protein kinases consisting of homologs from yeast (Yak1p), slime mold (YakA), insects (mnb), and mammals (DYRK
paralogs).29-33 The ability of genetically related kinases
in other species to negatively regulate cell growth and the data
reported here suggest that REDK may have a role in the erythroid
cell's decision to exit the cell cycle and to commit to terminal differentiation.
Cloning of human REDK
Plasmid construction
Cell culture Human bone marrow cells from normal donors (obtained by informed consent) were washed with phosphate-buffered saline (PBS), overlaid on 1-Step 1.077 g/mL density medium (Accurate Scientific, Westbury, NY), and separated by density-gradient centrifugation at 4°C. Low-density cells were collected at the interface after centrifugation and were washed extensively in PBS. Low-density marrow cells were adjusted to 3.3 × 106 cells/mL in PBS after lysis of red blood cells in 0.9% NH4Cl, pH 7.0. Cells were seeded at 5 to 8 × 105/mL in Iscove's modified essential medium (IMEM) containing 20% heat-inactivated fetal bovine serum and cultured at 37°C, 5% CO2. Recombinant human growth factors used were stem cell factor, thrombopoietin, GM-CSF, IL-3 (R&D Systems, Minneapolis, MN); Epogen (EPO) and Neupogen (G-CSF) (Amgen, Thousand Oaks, CA); and flt3 ligand (Genzyme, Cambridge, MA). UT7-EPO and TF1 cells were maintained in IMEM/10% fetal bovine serum (FBS) with 0.4 U/mL EPO and RPMI 1640/10% FBS with 2 ng/mL GM-CSF (Hanna Pharmaceutical Supply, Wilmington, DE), respectively. CD34+ cells were isolated by immunomagnetic separation according to the manufacturer's directions (Miltenyi, Auburn, CA). Two rounds of purification resulted in greater than 95% CD34+ cells as determined by flow cytometry.Antisense oligonucleotides and colony-forming assays Bone marrow cells were incubated for 6 hours at 37°C in PBS containing 50 ng/mL stem cell factor (SCF) and 10 µmol/L phosphorothioate oligonucleotides, which were synthesized with 2 terminal phosphorothioate linkages (lowercase) purified by high-performance liquid chromatography and gel filtration (Synthegen, Houston, TX) and were resuspended in sterile distilled water before use. The oligonucleotides tested were REDK sense (S223 5'-gtT GGG GGA TGG TGT CTA Tga C), REDK antisense (AS244 5'-caT AGA CAC CAT CCC CCa aC), and sequences specific for REDK-L (AS155 5'-tgC CTC CCA TCT CCT AGc tC) and REDK-S (AS480 5'-ccA CTT CAT TTT CTG GTG GAt gG). Mutant oligonucleotides contained 1 (AS480M1 5'-ccA CTT CAT TTT CTG GTG GAt gG) or 2 (AS480M2 5'-ccA CTT CAT TTT CTG GTG GAt gG) point mutations. After incubation with oligonucleotides and SCF, cells were diluted into MethoCult medium (StemCell Technologies, Vancouver, Canada) containing either a mixture of hematopoietic growth factors (SCF, IL-3, IL-6, EPO, GM-CSF, G-CSF) or a medium supplemented with EPO, G-CSF, or GM-CSF (R&D Systems) alone and dispensed onto 12-well plates. Colonies were scored after 7 days (CFU-E, CFU-G) and 14 days (CFU-GM, BFU-E, CFU-GEMM) of incubation in lowered O2 (5%) and 7.5% CO2 in a humidified environment. Erythroid colonies were identified on the basis of size and color (distinctively red). Three plates were scored per determinant. Statistical differences in colony growth were determined by t test (P < .05).Blots and hybridizations RNA was extracted using the RNeasy kit (Qiagen, Chatsworth, CA) and affinity chromatography over oligo-dT cellulose (Pharmacia Biotech) for isolation of polyA + RNA, or it was purchased (Clontech). Northern blots were prepared by electrophoresing total RNA (10 µg/lane) in denaturing formaldehyde/agarose gels, vacuum blotting to nylon, and ultraviolet light cross-linking, or they were purchased from Clontech (multiple-tissue Northern blots). Slot blots were prepared with a vacuum manifold and diluted polyA + RNA obtained from cell lines or tissues. Northern and slot blot hybridizations were carried out in 6× SSC, 1% sodium dodecyl sulfate (SDS), and 10% dextran sulfate at 65°C. A 0.8-kb REDK cDNA fragment (allowing equivalent detection of long and short REDK mRNA) and a 1.2-kb DYRK2 cDNA fragment were labeled using random hexamers and -32P-dATP as probes. Blots were exposed to phosphor
storage screens and scanned for analysis.
Reverse transcription-polymerase chain reaction Reverse transcription (RT) of 1 µg denatured RNA was performed using 25 µmol/L random hexamers (Boehringer Mannheim) and 200 U superscript II (Gibco) in 20 µL 1× buffer supplied by the manufacturer at 42°C, and then it was diluted 5- to 10-fold. Polymerase chain reaction (PCR) was performed in a Perkin Elmer 9600 thermal cycler using a common 3'-primer (5'-CGA TAA GCT AGA TGG TCT CGA GGT) and a specific 5'-primer (REDK-L-specific, 5'-CCG AGC TAG GAG ATG GGA GGC ACA, 634-bp product; REDK-S-specific, 5'-ATT TTG CCT CCA CCA TCC ACC AGA, 628-bp product; REDK, 5'-CCT TCT GAA CCA CCT CCA CCC AGA, 466-bp product). Reactions contained 1 µL cDNA and 1× Advantage Polymerase Mix (Clontech) in the supplied buffer. Amplification began after 2 minutes of preamplification denaturation at 94°C, with cycling at 94°C for 20 seconds, 68°C for 20 seconds, and 72°C for 4 minutes for up to 34 cycles. Quantitation was performed at points during exponential amplification. Products were visualized by ethidium-bromide staining, and gels were scanned by fluorometry for quantitation and were analyzed using ImageQuant software (Molecular Dynamics, Sunnyvale, CA). The PCR product for G3PDH was analyzed to allow for the normalization of data for quantitation.Preparation of protein extracts and analysis Whole-cell lysates were prepared using 50 mmol/L Tris-HCl, pH 7.5, 50 mmol/L NaCl, 1 mmol/L EDTA, 1 mmol/L EGTA, 1% NP-40, 50 mmol/L NaF, 5% glycerol, 0.5% sodium orthovanadate, and a protease inhibitor cocktail (1 µg/mL aprotinin, bestatin, and leupeptin and 1 mmol/L phenylmethylsulfonyl fluoride). Nuclear protein extracts were obtained by lysing the plasma membrane with 0.2% NP-40 in a hypotonic buffer consisting of 20 mmol/L HEPES, pH 8.0, 20 mmol/L NaF, 1 mmol/L each sodium orthovanadate, sodium pyrophosphate, EDTA, EGTA, and dithiothreitol, and protease inhibitors. After this the nuclei were pelleted at 16,000g and eluted with high-salt buffer (hypotonic buffer above containing 420 mmol/L NaCl and 20% glycerol). Protein concentrations were determined by Bradford assay (Bio-Rad, Hercules, CA) using bovine serum albumin as a standard. Extracts were subjected to SDS-PAGE or to immunoprecipitation. SDS-PAGE was performed using Tris-glycine-SDS gels (7.5% or 15%) and were subsequently transferred to nitrocellulose for Western blotting and development by ECL (Amersham, Arlington Heights, IL) or for drying followed by autoradiography for kinase activity assays.
The cloning of different REDK cDNA isoforms A search of the SmithKline Beecham cDNA database identified a partial human cDNA clone with homology to a dual-specificity kinase termed Yak1p from Saccharomyces cerevisiae. Using conventional cDNA cloning methods, 2 full-length cDNA strands were identified: a 2.3-kb strand from a human testis cDNA library and a 2.1-kb strand from a skeletal muscle cDNA library. Comparison of these 2 cDNA strands indicated that the 3'-most 1844 nucleotides were identical (Figure 1A). The cDNA from the skeletal muscle library was 266 nucleotides shorter than the testis cDNA, but it encoded a protein 20 amino acids longer at the amino terminus than that obtained from the testis library. We have termed these cDNA strands REDK-L (longer protein) (GenBank accession number AF1865773) and REDK-S (shorter protein) (GenBank accession number AF186,774) (Figure 1B). The presence of the splice site acceptor consensus sequence, AGG, in REDK-L suggested that the differences between these 2 forms of cDNA might have resulted from alternative splicing.37 The presence of an in-frame stop codon immediately 5' of the initiation codon indicated that both cDNA strands were full length. They were nearly identical to a sequence reported previously29; however, DYRK3 differed at the 5' end and encoded the shortest translation product. Analysis of the 5'-nucleotide sequence indicated that the DYRK3 cDNA was identical to REDK-L, except that DYRK3 lacked a single G residue present in REDK-L and that DYRK3 did not contain an upstream termination codon.
Expression of REDK is restricted primarily to hematopoietic tissues A REDK cDNA fragment common to both the long and the short forms of cDNA was hybridized to Northern blots containing polyA + RNA from a variety of human tissues to evaluate the distribution and abundance of the REDK message (Figure 2). The highest levels of expression were in testis, fetal liver, and bone marrow. The hybridization to -actin and G3PDH probes was shown to provide an
indication of relative loading of RNA kinase. Although there was some
variation across the panel of tissues, the expression of REDK was
clearly high in the 3 tissues compared to others surveyed. In most
other tissues, levels were below the detection limit, but low levels
were discerned for heart, pancreas, lymph node, and thymus. REDK was
found predominantly as a 2.5-kb message, but in fetal liver and bone
marrow, 8- and 10-kb species were substantial components, suggestive of
tissue-specific alternative splicing. Volume integration of the
PhosphorImager counts indicated that levels of REDK message in testis
was approximately 10-fold higher than that in fetal liver and bone
marrow.
Erythroid cell lines express the highest level of REDK message To characterize further the expression of REDK, pA + RNA from a panel of hematopoietic cells and from several hematopoietic tissues was blotted and hybridized to the cDNA probe for REDK (Table 1). Most samples, including myeloid, monocytic, and lymphoid cell lines, and the megakaryoblastic cell lines Mo7e and CMK86, produced only background signals. In contrast, erythroid cell lines and the EPO-responsive cell lines UT7-EPO, TF1, K562 and HEL showed substantially increased levels of REDK, suggesting that REDK might function specifically in erythroid cells. This possibility is corroborated by the very low expression levels of REDK in peripheral blood leukocytes and myeloid cells compared with the REDK message present in bone marrow. The pattern obtained with a probe for DYRK2, the closest known mammalian homolog to REDK, was dissimilar, showing that these homologous kinases are present in different cell types. Neither REDK nor DYRK2 was expressed in a selection of transformed cell lines (A549, HeLa, MRC5). Northern blot analysis with total RNA confirmed the elevated expression in cells with erythroid character. As in bone marrow and fetal liver tissues, 3 REDK-hybridizing species were present, and at similar sizes (data not shown).
REDK message is up-regulated and maintained in human primary bone marrow treated with EPO To investigate the expression of REDK in normal hematopoietic cells, we prepared total RNA Northern blots from primary human bone marrow cells exposed to factors for 3 or 7 days before harvesting and isolation of RNA (Figure 3). The photograph of ethidium bromide staining of the 28S rRNA bands indicates the relative loading. A low level of the 3 REDK species can be detected in the untreated cells. Cultures stimulated with EPO + SCF display up-regulation and sustained expression of REDK. This can be clearly seen at the 3-day point and is more pronounced by 7 days. It is not possible to determine whether the increase in steady-state RNA level resulted from a greater number of expressing cells or higher levels in the cells expressing REDK. Conversely, cultures with SCF, G-CSF, or TPO, but without EPO, showed a loss of REDK expression, even though there was proliferation under all conditions (data not shown). A low level of REDK message was obtained when cells were cultured with IL-3, which supports the growth and differentiation of multiple lineages, including early erythroid progenitors. REDK was also present when cells were treated with EPO alone for 3 and 7 days, though the up-regulation was more modest (data not shown).
Alternative splicing of the REDK message is tissue dependent To profile expression of the REDK-L and REDK-S messages independently, we performed semiquantitative RT-PCR with primers detecting either total REDK species (Figure 4) or specific products from REDK-L or REDK-S (Figure 5). Selected tissues (testis, bone marrow, fetal liver, heart, and spleen) were evaluated based on evidence of REDK expression from multiple tissue Northern blots. Amplification cycles were chosen so that the initial detection of products could be monitored to estimate relative expression levels and to allow meaningful quantitation. The REDK message is most abundant in testis, with the short form predominating approximately 6:1. Substantial product was also obtained in bone marrow and fetal liver, with approximately 11% and 8% as much as testis, respectively. In these tissues, the pattern was reversed, with the long form more prevalent. Semiquantitative RT-PCR determinations yielded long-to-short proportions of 10.5:1 for bone marrow and 8:1 for fetal liver. In all 3 tissues, the product from the common primer pair was approximately equal to the sum of the long and the short forms. Much lower levels of REDK were detected in heart and spleen. Amplification of heart and spleen with the REDK-L and REDK-S primer sets indicated that the REDK-L and REDK-S products constituted only approximately 10% of the REDK detected, suggesting the presence of other splice variants. Analysis of RNA from UT7-EPO and TF1 cells showed that both long and short forms were expressed and that they were present at approximately equal levels (data not shown).
Hematopoietic progenitor cells express REDK and display increased REDK-S during erythroid differentiation CD34+ cells isolated by magnetic affinity separation were cultured with EPO and SCF up to 10 days, followed by RNA extraction and semiquantitative RT-PCR analysis (Figure 6). Both REDK-L and REDK-S were present in the CD34+ cells at day 0, consistent with a role in progenitor cells. During the culture period, the abundance of the REDK-L message decreased slightly (approximately 2-fold), whereas the REDK-S form increased 5-fold after day 3 and remained elevated through 10 days. By day 10 the 2 species were present at approximately equal levels, though the REDK-L RNA began at an approximately 10-fold higher relative level at day 0. This 10-fold change in the relative expression of REDK-L and REDK-S points to a significant, specific role for the REDK-S form.
REDK is a nuclear protein whose expression correlates with erythroid differentiation UT7-EPO and TF1 cells are human EPO-responsive cell lines that can be induced to differentiate and become hemoglobin-positive when stimulated with hemin or with EPO (data not shown). Using polyclonal antisera raised to a RED-specific peptide (see "Materials and methods"), a protein of 65 to 70 kd was detected on Western blots from whole-cell lysates; this band was not detected by the preimmune sera (Figure 7). Western blotting of whole-cell lysates with the Y3-52 sera indicated a modest accumulation of REDK protein in UT7-EPO cells after hemin treatment. REDK protein was also present in TF1 cells, but EPO-stimulated hemoglobination did not alter the amount detected (data not shown). Crude fractionation of cells through the preparation of cytoplasmic and nuclear protein extracts further showed that REDK protein was predominantly a nuclear protein (Figure 8). This preference appeared to remain constant whether the cells were in log phase, deprived of growth factor, or induced to differentiate with hemin (UT7-EPO) or EPO (TF1). Y3-52-IP/activity assays of the cytoplasmic and nuclear protein extracts indicated that most of the REDK activity was nuclear. The identification of these proteins is under investigation.
REDK phosphorylates myelin basic protein and histones H2b and H3
Treatment of human bone marrow with REDK antisense oligonucleotides
increases the number of erythroid colonies and increases the
sensitivity to erythropoietin
We have identified a human serine/threonine kinase we call REDK that
is regulated in its expression and isoform profile during hematopoietic
development. REDK was identified and cloned based on its homology to
the yeast kinase, Yak1p, which acts negatively to regulate the cell
cycle.38 The sequence for REDK is also highly related to
another recently published human sequence, DYRK3.29 However, the sequences for REDK and DYRK3 differ at their
5'-ends. A survey of hematopoietic tissues and cell lines shows
that REDK is predominantly found in cells with erythroid
characteristics. Its presence in the EPO-responsive UT7-EPO and TF1
cell lines and in the expression patterns suggests that REDK may have
an erythroid-specific role in development. Furthermore, Northern blots
of hematopoietic tissues and cells consistently display 3 RNA species
related to REDK at 2.5, 8, and 10 kb, and we have cloned 2 different
variants of REDK message that are predicted to yield proteins with
differing amino termini. The difference in expression patterns of the
REDK messages is consistent with tissue-specific regulation, and the
encoded REDK-S and REDK-L may fulfill distinct roles.
We thank Dr Don Wojchowski (Pennsylvania State University, State
College, PA) for many helpful discussions and for critical reading of
the manuscript.
Submitted November 9, 1999; accepted January 7, 2000.
Reprints: Kenneth A. Lord, SmithKline Beecham Pharmaceuticals,
UP1455, 1250 S. Collegeville Road, Collegeville, PA 19426; e-mail:
kenneth_a_lord{at}sbphrd.com.
The publication costs of this
article were defrayed in part by
page charge payment. Therefore,
and solely to indicate this fact,
this article is hereby marked
"advertisement"
in accordance with 18 U.S.C.
section 1734.
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