| |
|
|
|
|
|
|
|||
|
PHAGOCYTES
From the Division of Hematology/Oncology, Cedars-Sinai
Research Institute, UCLA School of Medicine, Los Angeles, CA; and
Department of Medicine, Kochi Medical School, Kochi,
Japan.
C/EBP The human CCAAT/enhancer binding protein (C/EBP)
family of transcription factors includes C/EBP The human C/EBP To identify other myelomonocytic target genes regulated by the C/EBP Mice and thioglycollate challenge
RNA preparation and complementary
DNA synthesis
Representational difference analysis RDA was performed using PCR-Select cDNA Subtraction Kit (CLONTECH), as described previously.32-34 Subtracted nested-polymerase chain reaction (PCR) products were cloned into a plasmid using an Original TA cloning kit (Invitrogen, Carlsbad, CA) and electroporated into competent Escherichia coli. Finally, subtracted cDNA libraries were constructed. To make 2 sets of membrane filters, E coli colonies were blotted onto nylon membranes and duplicated. Probes from either tester or driver cDNA were generated from the same subtracted nested-PCR product by separating adaptors with restriction enzyme RsaI. After probes were purified using the GENECLEAN II kit (BIO 101 Inc, La Jolla, CA), membranes containing cDNA libraries were hybridized with either tester or driver probe in a standard condition. By comparing signals between 2 blots, differentially expressed clones were picked and cultured. Plasmids were isolated with a standard method and sequenced with Thermo Sequenase II dye terminator cycle sequencing premix kit (Amersham Pharmacia Biotech, Inc, Cleveland, OH), as per manufacturer's protocol. Sequence data were identified via the GenBank.Virtual Northern blot and Northern blot analyses Five hundred nanograms of PCR-amplified (nonsubtracted) cDNAs were electrophoresed on agarose gels (1.2%), and Southern blotted onto nylon membranes. These filters were hybridized at 65°C for 3 hours using a Rapid-hyb buffer (Amersham Life Science) with [ -32P] dCTP-labeled DNA probes, which were obtained by
RDA. Filters were rinsed to a final stringency of 0.25 × SSC and
exposed to a Kodak X-Omat or a Biomax film (Eastman Kodak, Rochester,
NY) at 70°C with an intensifying screen. To obtain a
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) probe for control
hybridization, murine cDNAs were amplified with specific primers for
GAPDH included in the PCR-Select cDNA subtraction kit (CLONTECH),
cloned into plasmid using the TA cloning method, and sequenced for
integrity. Clones that showed no significant difference, as determined
by virtual Northern blot analysis, were excluded for further consideration.
Ten micrograms of each total RNA sample were electrophoresed on agarose
formaldehyde gels and transferred onto nylon membranes. The blots were
hybridized at 65°C overnight with [
Thioglycollate challenge Twenty C/EBP -knockout mice at the age of 1 month and 20 age-matched wild-type mice received thioglycollate intraperitoneally, and peritoneal lavage fluids were collected after 24-hour stimulation. Total cell numbers in the fluid were not different between control and
knockout (control, [2.1 ± 0.9] × 107; knockout,
[2.7 ± 2.0] × 107, respectively). In addition, the
ratios of the granulocyte (G) to macrophage (M) populations showed no
difference between these 2 groups (control,
G:M = 65.6 ± 9.5:34.4 ± 9.5; knockout, G:M = 61.0 ± 9.2
:39.1 ± 9.2, respectively).
Identification of differentially expressed genes between
C/EBP (10.2%), cathepsin L (6.3%), C10 chemokine (6.3%), and
galactose/N-acetyl galactosamine (Gal/GalNAc)-specific lectin (1.7%). The other clones were not so frequent as these (data
not shown). Interestingly, C/EBP was not identified. Fifteen clones
disclosed no major homology to previously known sequences, suggesting
that these genes might be unknown. The unknown clones 1, 2, and 3 of
the 15 unknown clones showed partial homology to asialoglycoprotein
receptor gene (87 of 407 bases), proapoptotic protein (siva) gene (50 of 340 bases), and pig alveolar macrophage chemotactic factor II gene
(26 of 420 bases), respectively.
Expression of genes in C/EBP ,
monocyte chemotactic protein-3 (MCP-3), and
Gal/GalNAc-specific lectin were differentially expressed in normal
cells, as measured by virtual Northern blot. Cathepsin L was strongly
expressed in the wild-type; however, the difference between wild-type
and knockout mice was modest. MIP-1 was also strongly expressed in
the wild-type and weakly expressed in the knockout mice. MCP-3 was
modestly expressed in the wild-type and very weakly expressed in the
knockout mice. Gal/GalNAc-specific lectin was not expressed in the
knockout mice, as determined by virtual Northern blot. Interestingly,
unknown clones 1, 2, and 3 were almost exclusively expressed in the
wild-type mice. Unexpectedly, another 26 clones, including ETa-1, C10
chemokine, and some unknown genes, did not show a significant
difference between wild-type and knockout mice, as examined by virtual
Northern blot. Thus, these clones were excluded for further
consideration. Northern blot analysis using total RNA from peritoneal
cells of wild-type and knockout mice and using cathepsin L, MIP-1 ,
and MCP-3 cDNAs as probes confirmed that these genes were
differentially expressed in wild-type mice, as measured by the
"real" Northern blot (Figure 2). These results are summarized in
Table 1.
The expression of the C/EBP We have found that 4 known genes (cathepsin L, MIP-1 Cathepsin L (also called macrophage cysteine proteinase [MCP], major excreted protein [MEP]) is a member of the papain superfamily of lysosomal cysteine proteinase with a major role in intracellular protein catabolism.35 Cathepsin L has the greatest collagenolytic and elastinolytic activity in vitro of any of the cathepsins. It is expressed in various cell types, including macrophages, fibroblasts, and also malignant cells.35,36 MIP-1 Gal/GalNAc-specific lectin (also called asialoglycoprotein-binding
protein [ASGP-BP]) is expressed on macrophages and is inducible with
thioglycollate injection.43,44 Nonstimulated macrophages showed negligible levels of expression.44 This protein is
located on the cell surface with its COOH terminus on the extracellular side. It is homologous to the hepatic asialoglycoprotein receptor (rat
hepatic lectin).43 Gal/GalNAc-specific lectin is
responsible for carbohydrate-mediated endocytosis and plays an
important role in cell-to-cell adhesion. Our results suggest that the
absence of the Gal/GalNAc-specific lectin may contribute to the
impaired ability of neutrophils and macrophages to migrate correctly in the C/EBP Experimentally induced overexpression of C/EBP This study has found 3 previously unidentified, unknown genes that have
prominent differences in expression between C/EBP Taken together, we have found several genes that were differentially
expressed in macrophages and granulocytes of wild-type but not
C/EBP
We thank Dr A. Fritz Gombart and Dr Hiroshi Kawabata (Cedars-Sinai Medical Center/UCLA School of Medicine) for their generous technical assistance. We are grateful to Kim Burgin for her excellent secretarial help.
Submitted May 8, 2000; accepted July 21, 2000.
Supported in part by National Institutes of Health and US Army grants as well as the Parker Hughes Fund, C. and H. Koeffler Fund, Horn Foundation, and the Lymphoma Foundation of America.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: H. Phillip Koeffler, Division of Hematology/Oncology, B208, Cedars-Sinai Medical Center, UCLA School of Medicine, 8700 Beverly Blvd, Los Angeles, CA 90048.
1.
Landschulz WH, Johnson PF, Adashi EY, Graves BJ, McKnight SL.
Isolation of a recombinant copy of the gene encoding C/EBP.
Genes Dev.
1988;2:786-800 2. Akira S, Isshiki H, Suguita T, et al. A nuclear factor for IL-6 expression (NF-IL6) is a member of a C/EBP family. EMBO J. 1990;9:1897-1906[Medline] [Order article via Infotrieve].
3.
Cao Z, Umek RM, McKnight SL.
Regulated expression of three C/EBP isoforms during adipose conversion of 3T3-L1 cells.
Genes Dev.
1991;5:1538-1552
4.
Chang CJ, Chen TT, Lei HY, Chen DS, Lee SC.
Molecular cloning of a transcription factor, AGP/EBP, that belongs to members of the C/EBP family.
Mol Cell Biol.
1990;10:6642-6653 5. Descombes P, Schibler U. A liver-enriched transcriptional activator protein, LAP, and a transcriptional inhibitory protein, LIP, are translated from the same mRNA. Cell. 1991;67:569-579[Medline] [Order article via Infotrieve]. 6. Katz S, Kowenz-Leutz E, Muller C, Meese K, Ness SA, Leutz A. The NF-M transcription factor is related to C/EBP beta and plays a role in signal transduction, differentiation and leukemogenesis of avian myelomonocytic cells. EMBO J. 1993;12:1321-1332[Medline] [Order article via Infotrieve]. 7. Poli V, Mancini FP, Cortese R. IL-6DBP, a nuclear protein involved in interleukin-6 signal transduction, defines a new family of leucine zipper proteins related to C/EBP. Cell. 1990;63:643-653[Medline] [Order article via Infotrieve].
8.
Roman C, Platero JS, Shuman JD, Calame K.
Ig/EBP-1: a ubiquitously expressed immunoglobulin enhancer binding protein that is similar to C/EBP and heterodimerizes with C/EBP.
Genes Dev.
1990;4:1404-1415
9.
Kinoshita S, Akira S, Kishimoto T.
A member of the C/EBP family, NF-IL6 beta, forms a heterodimer and transcriptionally synergizes with NF-IL6.
Proc Natl Acad Sci U S A.
1992;89:1473-1476
10.
Williams SC, Cantwell CA, Johnson PF.
A family of C/EBP-related proteins capable of forming covalently linked leucine zipper dimers in vitro.
Genes Dev.
1991;5:1553-1567
11.
Antonson P, Stellan B, Yamanaka R, Xanthopoulos KG.
A novel human CCAAT/enhancer binding protein gene, C/EBP
12.
Chumakov AM, Grillier I, Chumakova E, Chih D, Slater J, Koeffler HP.
Cloning of the novel human myeloid-cell-specific C/EBP-
13.
Ron D, Habener JF.
CHOP, a novel developmentally regulated nuclear protein that dimerizes with transcription factors C/EBP and LAP and functions as a dominant-negative inhibitor of gene transcription.
Genes Dev.
1992;6:439-453
14.
Landschulz WH, Johnson PF, McKnight SL.
The DNA binding domain of the rat liver nuclear protein C/EBP is bibpartite.
Science.
1989;243:1681-1688 15. Xanthopoulos KG, Mirkovitch J. Gene regulation in rodent hepatocytes during development, differentiation and disease. Eur J Biochem. 1993;216:353-360[Medline] [Order article via Infotrieve].
16.
Koldin B, Suckow M, Seydel A, Wilken-Bergmann BV, Muller-Hill B.
A comparison of the different DNA binding specificities of the bzip proteins C/EBP and GCN4.
Nucleic Acids Res.
1995;23:4162-4169
17.
Mink S, Kerber U, Klempnauer KH.
Interaction of C/EBP
18.
LeClair KP, Blanar MA, Sharp PA.
The p50 subunit of NF-
19.
Hsu W, Kerppola TK, Chen PL, Curran T, Chen-Kiang S.
Fos and Jun repress transcription activation by NF-IL6 through association at the basic zipper region.
Mol Cell Biol.
1994;14:268-276
20.
Ray A, Hannink M, Ray BK.
Concerted participation of NF-
21.
Yamanaka R, Kim G-D, Radomska HS, et al.
CCAAT/enhancer binding protein
22.
Verbeek W, Gombert AF, Chumakov AM, Müller C, Friedman AD, Koeffler HP.
C/EBP
23.
Lekstrom-Himes J, Xanthopoulos KG.
Biological role of the CCAAT/enhancer binding protein family of transcription factors.
J Biol Chem.
1998;273:28545-28548 24. Scott LM, Civin CI, Rorth P, Friedman AD. A novel temporal expression pattern of three C/EBP family members in differentiating myelomonocytic cells. Blood. 1992;180:1725-1735.
25.
Morosetti R, Park DJ, Chumakov AM, et al.
A novel, myeloid transcription factor, C/EBP
26.
Yamanaka R, Barlow C, Lekstrom-Himes J, et al.
Impaired granulopoiesis, myelodysplasia, and early lethality in CCAAT/enhancer binding protein
27.
Lekstrom-Himes J, Xanthopoulos KG.
CCAAT/enhancer binding protein
28.
Lekstrom-Himes J, Dorman SE, Kopar P, Holland SM, Gallin JI.
Neutrophil-specific granule deficiency results from a novel mutation with loss of function of the transcription factor CCAAT/enhancer binding protein
29.
Chih DY, Chumakov AM, Park DJ, Silla AG, Koeffler HP.
Modulation of mRNA expression of a novel human myeloid-selective CCAAT/enhancer binding protein gene (C/EBP
30.
Park DJ, Chumakov AM, Vuong PT, et al.
CCAAT/enhancer binding protein
31.
Williams SC, Du Y, Schwartz RC, et al.
C/EBP
32.
Diatchenko L, Lau YFC, Campbell AP, et al.
Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.
Proc Natl Acad Sci U S A.
1996;93:6025-6030
33.
Akopyants NS, Fradkov A, Diatchenko L, et al.
PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori.
Proc Natl Acad Sci U S A.
1998;95:13108-13113 34. Sagerström CG, Sun BI, Sive HL. Subtractive cloning: past, present, and future. Annu Rev Biochem. 1997;66:751-783[Medline] [Order article via Infotrieve]. 35. Joseph LJ, Chang LC, Stamenkovich D, Sukhatme V. Complete nucleotide and deduced amino acid sequences of human and murine preprocathepsin L: an abundant transcript induced by transformation of fibroblasts. J Clin Invest. 1988;81:1621-1629. 36. Ishidoh K, Kominami E. Gene regulation and extracellular functions of procathepsin L. Biol Chem. 1998;379:131-135. 37. Baggiolini M. Chemokines and leukocyte traffic. Nature. 1998;392:565-568[Medline] [Order article via Infotrieve]. 38. Baggiolini M, Dewald B, Moser B. Human chemokines: an update. Annu Rev Immunol. 1997;15:675-705[Medline] [Order article via Infotrieve].
39.
Poltorak AN, Bazzoni F, Smirnova II, et al.
MIP-1
40.
Mohamadzadeh M, Poltorak AN, Bergstresser PR, Beutler B, Takashima A.
Dendritic cells produce macrophage inflammatory protein-1 41. Loetscher P, Seitz M, Clark-Lewis I, Baggiolini M, Moser B. Monocyte chemotactic proteins MCP-1, MCP-2, and MCP-3 are major attractants for human CD4+ and CD8+ T lymphocytes. FASEB J. 1994;8:1055-1060[Abstract]. 42. Noso N, Proost P, Van Damme J, Schröder JM. Human monocyte chemotactic proteins-2 and 3 (MCP-2 and MCP-3) attract human eosinophils and desensitize the chemotactic responses towards RANTES. Biochem Biophys Res Commun. 1994;200:1470-1476[Medline] [Order article via Infotrieve].
43.
Ii M, Kurata H, Itoh N, Yamashita I, Kawasaki T.
Molecular cloning and sequence analysis of cDNA encoding the macrophage lectin specific for galactose and N-acetylgalactosamine.
J Biol Chem.
1990;265:11295-11298
44.
Sato M, Kawakami K, Osawa T, Toyoshima S.
Molecular cloning and expression of cDNA encoding a galactose/N-acetylgalactosamine-specific lectin on mouse tumoricidal macrophages.
J Biochem.
1992;111:331-336
© 2000 by The American Society of Hematology.
| ||||||||||
![]() |
Y.-J. Lee, L. C. Jones, N. A. Timchenko, D. Perrotti, D. G. Tenen, and S. C. Kogan CCAAT/enhancer binding proteins alpha and epsilon cooperate with all-trans retinoic acid in therapy but differ in their antileukemic activities Blood, October 1, 2006; 108(7): 2416 - 2419. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. F. Gombart, U. Krug, J. O'Kelly, E. An, V. Vegesna, and H. P. Koeffler Aberrant expression of neutrophil and macrophage-related genes in a murine model for human neutrophil-specific granule deficiency J. Leukoc. Biol., November 1, 2005; 78(5): 1153 - 1165. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Kim, S. Sharma, Y. Li, E. Cobos, J. J. Palvimo, and S. C. Williams Repression and Coactivation of CCAAT/Enhancer-binding Protein {epsilon} by Sumoylation and Protein Inhibitor of Activated STATx Proteins J. Biol. Chem., April 1, 2005; 280(13): 12246 - 12254. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Shiohara, A. F. Gombart, Y. Sekiguchi, E. Hidaka, S. Ito, T. Yamazaki, H. P. Koeffler, and A. Komiyama Phenotypic and functional alterations of peripheral blood monocytes in neutrophil-specific granule deficiency J. Leukoc. Biol., February 1, 2004; 75(2): 190 - 197. [Abstract] [Full Text] [PDF] |
||||
![]() |
B.-T. H. Truong, Y.-J. Lee, T. A. Lodie, D. J. Park, D. Perrotti, N. Watanabe, H. P. Koeffler, H. Nakajima, D. G. Tenen, and S. C. Kogan CCAAT/Enhancer binding proteins repress the leukemic phenotype of acute myeloid leukemia Blood, February 1, 2003; 101(3): 1141 - 1148. [Abstract] [Full Text] [PDF] |
||||
![]() |
Z. Lian, Y. Kluger, D. S. Greenbaum, D. Tuck, M. Gerstein, N. Berliner, S. M. Weissman, and P. E. Newburger Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiat |