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Blood, Vol. 96 No. 3 (August 1), 2000:
pp. 1130-1135
RED CELLS
Triose phosphate isomerase deficiency in 3 French families: two
novel null alleles, a frameshift mutation (TPI Alfortville) and an
alteration in the initiation codon (TPI Paris)
Colette Valentin,
Serge Pissard,
Josiane Martin,
Delphine Héron,
Philippe Labrune,
Marie-Odile Livet,
Michèle Mayer,
Terri Gelbart,
Arthur Schneider,
Isabelle Max-Audit, and
Michel Cohen-Solal
From Unité INSERM U474 and Laboratoire de
Biochimie-Génétique, Hôpital Henri Mondor,
Créteil, France; Service de Pédiatrie et de
Génétique, Groupe Hospitalier
Pitié-Salpétrière, Paris, France; Service de
Pédiatrie and UPRES UA2704, Hôpital Antoine
Béclère, Clamart, France; Service de Pédiatrie,
Centre Hospitalier de Pays d'Aix, Aix en Provence, France; Service de
Neuropédiatrie, Hôpital Saint Vincent de Paul, Paris,
France; Department of Molecular and Experimental Medicine, The Scripps
Research Institute, La Jolla, CA; Department of Pathology, Finch
University of Health Sciences/The Chicago Medical School, North
Chicago, IL.
 |
Abstract |
Three French families with triose phosphate isomerase (TPI)
deficiency were studied, and 2 new mutations giving rise to null alleles were observed: a frameshift mutation with deletion of the 86-87 TG dinucleotide in codon 29 (TPI Alfortville) and a T A
transversion in nucleotide 2 of the initiation codon (TPI Paris). The
first mutation occurred in compound heterozygosity with the frequent
E105D mutation. The second mutation occurred in association with the
2-nucleotide promoter variant ( 43G, 46A). In a third family, the
propositus was an E105D homozygote. In the TPI Paris family, the
coinheritance of the 43, 46 promoter variant appeared to exert
little, if any, effect on TPI enzyme activity, a finding consistent
with 2 previous reports that questioned the putative role of the
promoter polymorphism as a true deficiency variant. Similarly, the
further coinheritance of glucose-6-phosphate dehydrogenase (G6PD)
A (202 G A/376 A G) appeared to have
little effect on the observed phenotype. Compound heterozygosity for the E105D mutation with the null allele TPI Alfortville appeared to
lead to a more severe clinical syndrome than did E105D homozygosity, suggesting that compound heterozygosity with null alleles may lead to
more profound clinical abnormalities than homozygosity with missense
alleles. A simple, rapid polymerase chain reaction and restriction
enzyme procedure for the E105D mutation was developed for prenatal
diagnosis in one family and subsequently used for screening in the
other families.
(Blood. 2000;96:1130-1135)
© 2000 by The American Society of Hematology.
 |
Introduction |
Human triose phosphate isomerase (TPI; EC 5.3.1.1) is a
homodimeric enzyme1,2 that catalyzes the interconversion of glyceraldehyde-3-phosphate and dihydroxyacetone phosphate and is
involved in glycolysis as well as in gluconeogenesis and triglyceride synthesis.3 The enzyme, which is expressed in all cell
types, is considered ubiquitous, and it is encoded by a single gene on chromosome 12 at locus 12p13.4,5 Three processed intronless pseudogenes on different chromosomes have been described.6
TPI deficiency, an autosomal recessive disorder, has been known since
1965.7 Heterozygotes are clinically normal. Homozygotes and
compound heterozygotes exhibit a somewhat variable syndrome that always
includes nonspherocytic hemolytic anemia. Except for 2 instances,8,9 progressive, severe, but somewhat variable neuromuscular dysfunction has been a major clinical feature, sometimes including mental retardation or other evidence of cerebral impairment. Thirteen different mutations in the human TPI locus have been identified.10 Among these, the mutation affecting amino
acid 105 (1592 G C; E105D) is the most
frequent.11
The severity of the syndrome, often manifested by death in the
fetal period or in early childhood or by devastating neuromuscular dysfunction, has prompted many families to seek prenatal diagnosis.
The variable severity of the syndrome may well be associated with
differing degrees of enzyme deficiency, which may in turn vary
according to the specific mutation. It seems reasonable to speculate
that compound heterozygotes with 1 null allele and 1 missense allele
might well exhibit syndromes of greater severity than might occur in
homozygotes or compound heterozygotes with missense alleles only. The
paucity of known null alleles10 and the failure to find
null allele homozygotes in more than 33 years of experience with TPI
deficiency are supportive of this conjecture. Also of considerable note
is the observation of embryo lethality in TPI null allele homozygous
mice.12
In this paper we present 2 French families with previously undescribed
null alleles as well as a third family with a homozygous E105D
mutation. For the E105D mutation, a diagnostic technique is described
that allows easy prenatal diagnosis and rapid screening for the mutation.
 |
Materials and methods |
Enzymatic analysis
Erythrocyte TPI and glucose-6-phosphate dehydrogenase (G6PD)
activities were assayed as recommended by the International Committee for Standardization in Haematology.13
DNA samples
A total of 5 to 10 ml of peripheral blood was drawn in
ethylenediaminetetraacetic acid from the subjects, their family
members, and normal control subjects. DNA was prepared using standard
techniques.14 Chorionic villus samples (CVS) for prenatal
diagnosis were processed as previously described.15 In all
instances, informed consent was obtained.
In vitro amplification
Polymerase chain reaction (PCR) amplifications were performed as
previously described,15 with minor modifications.
Intraintronic oligonucleotide primers were designed to amplify
fragments 250 to 800 base pairs (bp) in length to include the exons,
the intron-exon boundaries, and the promoter region. The primers are
listed in Table 1, and the analytic
strategy followed is shown in Figure 1.

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| Fig 1.
Strategy followed for amplification and sequencing of the
TPI gene.
Primers used and PCR conditions are described in Table 1. The strategy
followed used PCR amplification of the TPI gene in 5 parts, 2 for the
promoter region and 3 for the exons and intron-exon boundaries.
Fragment amplified with primers 520F and 776R overlaps both the
promoter and exon 1 regions.
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Prenatal diagnosis in family A
Detection of E105D mutation.
The mutation creates a DdeI recognition site (CTNAG):
GTCAG CTCAG. Exon 3 was amplified
together with exons 2 and 4 with primers 1838F and 2549R, generating a
712-bp fragment (Table 1 and Figure 1). Digestion with DdeI
gives rise to 5 fragments (289, 206, 87, 75, and 55 bp)
with the normal control gene and to 6 fragments (289, 178,
87, 75, 55 and 28 bp) with the E105D gene, the 206-bp fragment being cut into 2 new fragments of 178 and 28 bp.
Del 86-87 TG detection.
The mutation creates an MwoI restriction site
(GCN7GC):
GCN9GC GCN7GC.
Exon 1 was amplified with primers 520F and 776R, which generates a
258-bp fragment encompassing the first exon (Table 1 and Figure 1).
Digestion of the PCR fragment with MwoI produces 2 fragments
(190 and 68 bp) for the normal gene and 3 fragments (133, 68, and 55) for the mutant, the sum of
the 2 fragments generated by the new restriction site being 188, and
not 190 bp, because of the 2-bp deletion.
All resultant fragments were resolved on 1 × TBE, 4%
NuSieve/Seakem agarose gel (FMC Bioproducts,
Rockland, ME) and stained with ethidium bromide.
G6PD genotyping
G6PD genotyping was performed by sequencing and restriction enzyme
analysis with NlaIII and FokI as described
elsewhere.16,17
Sequence determination
Double-stranded PCR products were sequenced using the same set of
oligonucleotides used for initial amplification and internal primers.
The reference nucleotide sequence for the human TPI gene was GenBank
locus HSTPI1G, accession X69723. The numbering system used in this
paper varies from that of GenBank and conforms to current
recommendations for monogenic disorders18 in which the
number 1 designates the A of the initiation ATG codon in both genomic
DNA and complementary DNA as well as the corresponding coded methionine
of the expressed peptide.
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Results |
Case reports
Family A.
A 970-g premature male infant was born at 30 weeks of gestation, 41 days after rupture of the membranes, resulting in oligohydramnios and
infection with streptococcus B. At birth, the infant required artificial ventilation because of pulmonary immaturity. Physical examination showed pallor, hepatomegaly and splenomegaly, diffuse edema, and jaundice of the umbilical cord. Laboratory studies indicated
hemolytic anemia (hemoglobin 77 g/L, reticulocytes
418 × 109/L) requiring blood
transfusion. Despite treatment, refractory hypoxemia and clinical signs
of bilirubin encephalopathy developed. The infant died at age 4 days.
Postmortem examination revealed signs of hemolytic anemia (marked
extramedullary hematopoiesis), signs of severe pulmonary immaturity,
and pulmonary infection.
Both parents were healthy and unrelated. The father, age 60, had 5 healthy children from a previous marriage. The mother was 37 years old.
In both parents, hematologic data were in the normal range except for a
moderate reticulocytosis (181 × 109/L and
113 × 109/L for the father and the
mother, respectively). TPI activity was approximately 50% of control
values (Table 2). Unfortunately, TPI was
not assayed in the infant, because a blood sample prior to exchange
transfusion had not been retained.
Two years later, the mother was again pregnant. At 11 weeks of
gestation, CVS molecular diagnosis demonstrated that the fetus was a
heterozygote who had inherited the paternal mutant allele and the
maternal normal allele. The infant was born after a normal full-term
pregnancy, weighing 3060 g. Physical examination at birth was normal,
and at age 2, at the time this article was submitted, the
child remained perfectly healthy.
Family B.
The propositus was the second living child of clinically normal
unrelated parents. The father was of French origin and the mother was
from Madagascar. She had had 4 pregnancies with only 2 living children.
The first pregnancy resulted in death in utero of a female fetus at 7 months, and the third pregnancy ended spontaneously at 6 weeks.
The birth of the propositus (fourth pregnancy) was apparently normal,
with spontaneous delivery at 41 weeks.
Psychomotor retardation was noted at 4 months, and a seizure crisis
occurred at 7 months. Further clinical evolution was marked by severe
convulsive microcephalic encephalopathy and growth retardation. At 8 years, the child was unable to walk alone and had not developed language skills.
The results of investigations, including karyotyping, neuroradiologic
imaging, electrophysiologic testing, and muscle biopsies, were normal.
There were no laboratory data indicative of hemolytic anemia.
Erythrocyte TPI activity was reduced to heterozygous levels in the
father and was in the low normal range in the mother and healthy
brother. TPI activity in the propositus was in the heterozygous range,
essentially the same as in the father. Erythrocyte G6PD activity was
markedly reduced in the patient and moderately reduced in the mother
(enzyme data presented in Table 2).
Family C.
The parents were unrelated and had a normal older daughter. The
propositus was born after a normal full-term pregnancy. Shortly after
birth, severe hemolytic anemia (hemoglobin 40 g/L) was
noted. Transfusions were performed on day 2 and again at 3 and 6 weeks. Chronic hemolytic anemia persisted, with hemoglobin values ranging 90 to 100 g/L, marked by a hemolytic crisis with a drop of hemoglobin to
70 g/L. Although neuromuscular development was initially
normal, slowing of development was noted at the end of the first year. At 27 months, mental development was apparently normal, but the patient
was unable to walk without assistance. Distal weakness, hypotonia, and
amyotrophy were noted. Electromyographic studies and motor and sensory
nerve conduction velocities were compatible with spinal motor neuron
involvement. Muscle biopsy confirmed fiber-type grouping and target
fibers, both of which are characteristic of denervation. A nerve biopsy
was normal.
At age 30 months, complete hematologic evaluation revealed TPI
deficiency in the propositus and lowered TPI activity in the heterozygous range in both clinically unaffected parents (Table 2).
Slowly progressive motor deterioration has continued. Language is
normal, but school-type skills appear to be delayed. Hemolytic anemia
is well tolerated, with hemoglobin values about 100 g/L, at the age of 6.
Molecular examination of TPI genes
PCR fragments that encompassed the promoter, exons, and intron-exon
boundaries in the TPI gene (Figure 1) were generated, purified, and
subsequently sequenced. In the case of the promoter, primers selected
initially had to be changed during the course of this study because we
detected errors (subsequently corrected) in the published sequence
(GenBank X69723).
A technique for rapid diagnosis, using PCR amplification followed by
digestion with the restriction enzyme DdeI, was developed for
the most frequent mutation (E105D) (Figure
2). This technique, initially devised for
prenatal diagnosis in family A, was subsequently employed for samples
from subjects in the other families and was of special importance in
the evaluation of family C.

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| Fig 2.
PCR digestion analysis in family A.
DNA was prepared from peripheral blood for patients I 1 and I
2. Patient II 1 died in the perinatal period and was not
available for the study. For the fetus (II 2), DNA was obtained from
CVS. "nal" indicates normal control sample, MWS (molecular weight
standard) = X174 RF/HaeIII fragments. (A) Pedigree of
family A. (B) PCR digestion of exon 3. Amplification of exons 2, 3, and
4 with the 1838 F and 2549 R set of primers was followed by digestion
with DdeI (normal fragment 206 bp, mutants fragments 178 and 28 bp). Patients I 1 and II 2 are heterozygous for the mutation; patient I
2 is normal. (B) PCR digestion of exon 1. Amplification with
the 520 F and 776 R set of primers followed by digestion
with MwoI (normal fragment 190 bp, mutant fragments 133 and 56 bp). Patients I 1 and II 2 are normal, and patient I 2 is heterozygous
for the mutation del 86-87.
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The father in family A was a TPI E105D heterozygote. The mother was a
heterozygote for a novel deletion TG of the 2 bases at positions 86 and
87 in codon 29 within exon 1, a mutation that we designated TPI
Alfortville. Prenatal diagnosis in this family at week 11 of a second
pregnancy revealed that the fetus was a TPI E105D heterozygote, and we
predicted correctly that the child would be unaffected (Figure 2).
In family B, the propositus had 2 TPI gene variations. The first one
involved a point mutation in the initiation codon with nucleotide 2 in
the ATG codon replaced by an A, giving rise to an AAG coding for a
hypothetical lysine. We designated this mutant as TPI Paris. The second
variation was the well-known tightly linked pair of transitions in
positions 43 and 46 in the promoter region, A G
and G A, respectively.19-21 The father was
heterozygous for the initiation codon mutation, while the mother was
heterozygous for the promoter transition pair. The brother with normal
TPI enzyme activity, like the mother, had only the double transition. The propositus and mother additionally had G6PD deficiency, with the
G6PD mutation characterized by sequencing and restriction analysis as
A (202 G A/376 A G).
In family C, the propositus, with severe hemolytic anemia, was
homozygous for the E105D mutation. Using the rapid technique described
above, it was shown that both parents were heterozygous for TPI E105D.
The sister of the propositus had a normal genotype.
Hematologic, enzymatic, and genotype results for all of the patients
and their families are summarized in Table 2.
 |
Discussion |
Hemolysis and progressive neurologic disease (neuromuscular
impairment with spasticity or mental retardation) are closely associated in almost all reported instances of TPI
deficiency.10 However, 2 subjects are known who had no
evident neurologic impairment even though hemolysis was
present.9,22 The relative preponderance, one to the other,
of hemolysis and neurologic dysfunction appears to vary from family to
family. This is somewhat surprising because TPI is a ubiquitous
housekeeping enzyme. However, it has been suggested that
protein-protein interactions may result in compartmentalization, with
differential enzyme expression in one tissue versus
another.9,22,23
TPI E105D, the most frequently occurring TPI mutation,10,11
affects subjects of diverse geographic and ethnic
origins.24 In a worldwide study of DNA samples from key
subjects in almost all known TPI E105D kindreds, including the families
reported here, complete linkage disequilibrium with 2 markers was
demonstrated for the E105D mutation. Haplotype analysis demonstrated
that all the E105D chromosomes carried the same otherwise uncommon
haplotype,25 consistent with the hypothesis that all E105D
subjects are descendants of a common ancestor, a finding supported by a
subsequent study by others.26 The predominance of the E105D
mutation has practical significance because questions concerning
prenatal diagnosis are often paramount among the concerns of affected families.
A rapid procedure for prenatal CVS detection of the E105D mutation,
developed for use in family A, later proved useful for prenatal
diagnosis and screening in other families. In the past, prenatal
diagnosis of TPI deficiency has been performed by direct TPI enzyme
activity and substrate analysis of fetal red blood cells collected by
cordocentesis,27,28 trophoblast homogenates, amniotic
cells,29 or by PCR amplification from nucleated cord-blood cells.30 The availability of a simpler technique using CVS, as described by Arya et al31 or in this paper, provides a
rapid, reliable method for the screening of the most frequent TPI mutation.
The occurrence of a significant number of known amino acid alterations
in TPI that are associated with markedly decreased enzyme activity has
been the basis of inquiries leading to at least a partial understanding
of the structure-function relationships of the enzyme
protein.32-34
The TPI Alfortville mutation almost certainly functions as a null
allele. The 2-base deletion in codon 29 results in synthesis of an
out-of-phase peptide of aberrant sequence extending for 40 residues
downstream before terminating at residue 70. This gross alteration
affects almost the entire peptide structure, predicting a total loss of
TPI function. The structural alteration is so profound that dimer
formation in TPI Alfortville/TPI E105D compound heterozygotes must
almost certainly be limited to homodimers of the TPI E105D protein
product alone, with total failure of heterodimer production and
predicted major quantitative diminution of expressed protein. This
alteration provides a ready explanation for the severe hemolysis that
contributed to the early death of the propositus in family A, a highly
likely but undocumented compound heterozygote for TPI Alfortville and
TPI E105D.
In family B, the allele with an initiation codon mutation (TPI Paris)
may well cause complete failure of production of the protein, thus
functioning as a null allele. A similar situation, in which the
initiation codon is replaced by a lysine codon, has been reported by
Waye et al35 for the -globin gene, resulting in a
0-thalassemia syndrome, ie, a gene functioning as a null allele.
Rather than complete failure of protein synthesis, an alternative
mechanism might be reinitiation at the next available ATG codon, 14 codons downstream, as suggested earlier.32 Such a mechanism
has in fact been recently demonstrated by Zhang and Maquat.36 Using constructs of the chloramphenicol
acetyltransferase (CAT) reporter gene linked to modified
fragments of the TPI gene, they noted that such reinitiation occurs
with stop codons in positions 1, 2, or 10. They further demonstrated
that the stability of the corresponding messenger RNAs was relatively
unimpaired, in contrast to the messenger RNAs expressed with stop
codons further downstream in the TPI gene.37,38 However,
the predicted protein product of reinitiation would lack the entire
-1 sheet as well as asparagine-12 and lysine-14, both residues
contributing to substrate binding and lysine-14 being additionally
known to play a key role in catalysis.33 Additionally, the
protein product would have 3 missing positive charges, further
contributing to instability of the 3-dimensional structure.
Consequently, even though we have not had the opportunity to perform
expression studies to demonstrate unequivocally the effect of the
initiation codon mutation, it is almost certain that TPI Paris would
function as a null allele regardless of which of the 2 aforementioned
mechanisms is at play.
Families A and C are both affected by the most frequently described
mutation, TPI E105D. This missense mutation results in an enzyme with
decreased activity. However, some residual activity remains, in sharp
contrast to the totally abolished activity predicted for the protein
products of presumed null alleles such as TPI Alfortville and TPI Paris.
It is noteworthy that the E105D homozygous patient in family C
exhibited a phenotype that was less severe than that of the presumed
but undocumented compound heterozygote in family A. Both would be
expected to express the same mutant protein (homodimers of E105D
peptide), but enzyme activity in the compound heterozygote would be
predicted to be one-half that of the homozygote.
It is also noteworthy that there have been no reports of TPI
deficiency null alleles occurring as homozygotes or as compound heterozygotes involving 2 differing null alleles.10 It is
likely that such combinations would be incompatible with life, as is apparently the case with homozygosity for TPI null alleles in mouse embryos.12
The promoter transition pair in positions 43 and 46 was
originally reported by Watanabe et al in 1996 associated with TPI heterozygosity as assessed by intermediate reduction of TPI enzyme activity.19 The linked pair of transitions is located
within the promoter region in the CAP proximal element (CPE) described by Boyer and Maquat close to the transcription initiation
site.39 Watanabe et al reasoned that the mutation would
reduce messenger RNA synthesis and resultant TPI enzyme activity, a
concept reinforced by the finding of yet a third abnormality in a small
number of TPI 43, 46 subjects a transversion at position
62 within the TATA box.
In family B, the mother and 1 brother were TPI 43, 46
heterozygotes. However, TPI enzyme activities of both were within the normal range, a finding differing from the report of Watanabe et
al19 but consistent with 2 more recent
reports20,21 that question the putative role of the paired
43, 46 substitution as a deficiency allele.19
Additionally, the propositus, a compound heterozygote for both the
paternal and maternal TPI variants, had enzymatic activity no less than
that of the father, a TPI heterozygote. This evidence strongly suggests
that the maternal 43, 46 variant did not contribute to the
clinical phenotype of the propositus. Similarly, coinheritance of G6PD
A (202 G A/376 A G) by both the
mother and the propositus added little, if anything, to the observed
phenotype, a phenomenon previously reported with the combination of
G6PD deficiency and TPI heterozygosity.40
Nevertheless, the family history of repeated spontaneous abortion
followed by a living child with severe progressive neuromuscular dysfunction is typical of TPI deficiency, and it is tempting to speculate that the propositus in this family may in fact represent a
forme fruste of TPI deficiency characterized by neurologic disease in
the absence of hemolytic anemia, a combination not previously described, even though the reverse combination, hemolytic anemia without neurologic disease, is well known.8,9 Demonstration of this provocative but entirely hypothetical possibility would depend
upon information not yet available, perhaps including demonstration of
tissue-specific TPI deficiency in the central nervous system, along
with increased dihydroxyacetone phosphate concentration as evidence of
perturbed glycolysis. However, such information cannot be obtained from
a living patient. Metabolic block would be an unexpected finding in red
cells from a subject without hemolytic anemia and with intermediate
erythrocyte TPI enzyme activity in the heterozygous range. However, it
has been suggested that cultured lymphocytes may be an appropriate
surrogate for neural tissue for many metabolic studies.41
At least for the present, such studies have been precluded by
geographic distance and reluctance of the parents to submit their child
to further scientific inquiry without clear, direct clinical benefit.
In 1998, Schneider et al revisited the putative role of the
43, 46 variant in TPI deficiency and found that the
43, 46 variant occurred in approximately 20% of African
American subjects.20 Their findings suggested that the
reduction in TPI activity occurred in a continuum ranging from the high
normal range to values suggestive of deficiency heterozygosity. They
further suggested that these variant substitutions, when associated
with the lower range of TPI enzyme activity, might contribute to TPI
deficiency if coinherited along with a missense or nonsense deficiency
allele. To our knowledge, only 2 such compound heterozygotes are known.
One is a well-defined instance of clinical TPI deficiency in a compound
heterozygote for the 43, 46, 62 variant along with
the E105D mutation,10,20 and the other is the propositus in
our family B. Observation of additional families with the TPI
43, 46 promoter variant in compound heterozygosity with
TPI missense or null alleles should be useful in arriving at a clearer
delineation of the role of TPI 43, 46 as a putative
deficiency variant, an open question discussed by Watanabe et
al,19 Schneider et al,20 and Humphries et
al,21 and again posed by our findings in family B.
 |
Acknowledgments |
The authors thank Jean-Marc Costa and Michel Videau for their help
during the PCR experiments, Emmanuelle Girodon for her help in prenatal
diagnosis, and Lynne E. Maquat for discussions of our sequencing
results. Ernest Beutler and Constantin T. Craescu are acknowledged for
multiple helpful discussions. This paper is dedicated to Raymonde and
Jean Rosa, who first described most of the patients and gave us
constant encouragement.
 |
Footnotes |
Submitted August 11, 1999; accepted March 27, 2000.
Supported by grants from INSERM, the Université Paris XII, and
the National Institutes of Health (grant HL25 552).
Reprints: Michel Cohen-Solal, Unité INSERM
U474, Maternité de Port-Royal, 123 Boulevard de Port-Royal, 75014 Paris, France; e-mail: mcs{at}cochin.inserm.fr.
The publication costs of this
article were defrayed in part by
page charge payment. Therefore,
and solely to indicate this fact,
this article is hereby marked
"advertisement"
in accordance with 18 U.S.C.
section 1734.
 |
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