| |
|
|
|
|
|
|
|||
|
HEMOSTASIS, THROMBOSIS, AND VASCULAR BIOLOGY
From the Unità di Aterosclerosi e Trombosi, IRCCS
"Casa Sollievo della Sofferenza," S Giovanni Rotondo; Centro
Regionale per le Emocoagulopatie, Azienda Ospedaliera
"Santobono-Pausillipon," Istituto di Patologia Generale e
Oncologia, Seconda Università di Napoli, Napoli; Istituto di
Medicina Interna e Geriatria, Università di Palermo, Italy; and
Department of Pediatrics, University of Pennsylvania School of
Medicine, and the Children's Hospital of Philadelphia, PA.
Congenital afibrinogenemia is a rare autosomal recessive disorder
characterized by a hemorrhagic diathesis of variable severity. Although
more than 100 families with this disorder have been described, genetic
defects have been characterized in few cases. An investigation of a
young propositus, offspring of a consanguineous marriage, with
undetectable levels of functional and quantitative fibrinogen, was
conducted. Sequence analysis of the fibrinogen genes showed a
homozygous G-to-A mutation at the fifth nucleotide (nt 2395) of the
third intervening sequence (IVS) of the Congenital afibrinogenemia is a rare autosomal
recessive disorder characterized by the complete absence of detectable
fibrinogen and an infinite prolongation of functional assays of clot
formation. Patients with congenital afibrinogenemia have a lifelong
hemorrhagic diathesis of variable severity, although abnormal bleedings
do not occur more frequently than in hemophilias A and B.1
Since the first case reported in 1920,2 approximately 150 cases have been described.3
Fibrinogen is a complex dimeric protein of 340 kd, composed of 3 pairs
of nonidentical polypeptides designated as A In congenital afibrinogenemia a failure of synthesis, secretion, or
intracellular transport has been supposed. However, to date, only few
defects in the fibrinogen genes have been identified: an 11-kb deletion
of the fibrinogen A We now present the molecular basis of a novel form of congenital
afibrinogenemia in a young female patient. Genetic characterization demonstrated that the patient was homozygous for a G-to-A transition at
the fifth nucleotide (nt 2395) of the third intervening sequence (IVS)
of the Informed consent was obtained from the patient and other members
of the family, after approval of the local Human Ethics Committee. The
studies were carried out according to the Principles of the Declaration
of Helsinki.
Materials
Fibrinogen measurement
Fibrinogen analysis Plasma was prepared from citrate anticoagulated whole blood and fibrinogen purified from 800 µL of plasma by precipitation with 225 µL of saturated ammonium sulfate. The pellet was washed 3 times with 25% saturated ammonium sulfate, and the fibrinogen was dissolved in 200 µL of an 8 mol/L urea solution, 0.1 mol/L Tris-HCl pH 8.0, 20 mmol/L dithiothreitol, and reduced for 4 hours at 37°C. Five microliters of sample buffer were added to 10 µL of reduced fibrinogen and 5 µL of this mix were loaded onto a 12% w/v polyacrylamide gel (PhastGel, Pharmacia, Uppsala, Sweden) and allowed to run at 30 mA for 6 hours (PhastSystem, Pharmacia). Then, the bands were silver stained.DNA analysis Isolation of DNA and polymerase chain reaction (PCR) analysis were performed according to standard procedures.16 For DNA extraction, peripheral blood leukocytes were separated by sedimentation and incubated overnight at 37°C in digestion buffer (100 mmol/L NaCl, 10 mmol/L Tris-HCl, 25 mmol/L EDTA, 1% w/v SDS) containing 0.1 mg/mL of proteinase K. The nucleic acid was isolated by phenol/chloroform extraction and ethanol precipitation. Amplifications of all coding regions of fibrinogen chain genes and intron/exon boundaries were achieved using sense and antisense oligonucleotides designed on the basis of known sequences of fibrinogen gene loci (GenBank accession numbers M64982, M64983, and M10014). Oligonucleotide custom synthesis service was from Life Technologies (Paisley, UK). PCR was carried out on 50 µL volume samples, in a Perkin Elmer-Cetus thermal cycler (Perkin-Elmer Cetus, Norwalk, CT). Each sample contained 0.1 µg of genomic DNA, 10 pmoles of each primer, 125 µmol/L of dNTP, 5 mmol/L Tris HCl pH 8.3, 50 mmol/L KCl, 1.5 mmol/L MgCl2, and 1 unit Taq polymerase. The solution was overlaid with 50 µL of mineral oil and, after an initial denaturation step (3 minutes at 95°C), it was put through 30 cycles each consisting of 1 minute at 95°C, 1 minute at 56°C to 60°C and 2 minutes at 72°C. Thereafter, 5 µL volumes of the amplification products were separated in a 2% w/v agarose-gel electrophoresis in TAE buffer (40 mmol/L Tris-Acetate,1 mmol/L EDTA pH 7.7), containing 0.5 µg/m ethidium bromide, and visualized under ultraviolet (UV) light. SSCP analyses were performed as described.17 Briefly, 3 µL of each amplification were added to 5 µL of formamide, containing loading dye, heated at 95°C for 5 minutes, chilled on ice, and immediately loaded onto a 20 cm × 60 cm × 0.4 mm 20% w/v acrylamide/TBE gel, with a acrylamide/bisacrylamide ratio of 29:1, without any other additive. The gel was run at 20 W for 16 hours at room temperature and single-stranded DNA bands were detected by using a silver staining method. Any difference was observed when the run was performed at 4°C or at 15°C. Amplified DNA fragments showing abnormal SSCP patterns were purified and subjected to direct cycle sequence analysis using the Taq dye-deoxy terminator method and an ABI PRISM 310 Genetic Analyzer sequencer (PE Biosystems, Foster City, CA) according to the manufacturer's instructions.RNA analysis A 766-base pair (bp) DNA fragment, spanning from 92-bp upstream exon 2 to 43-bp downstream exon 4, was amplified. Primer sequences were (sense: 1821-1832) 5'-GTGTGCTCTTCACAAAACGTTG-3' and (antisense: 2646-2625) 5'-ACTAAATCAGTCTT GCAGAGCA-3'. PCR was carried out on 50 µL volume samples, in a 480 Perkin Elmer-Cetus termal cycler (Perkin-Elmer Cetus, Norwalk, CT). Each sample contained 0.2 µg of genomic DNA, 25 pmoles of each primer, 200 µmol/L of dNTP, 5 mmol/L Tris HCl pH 8.3, 50 mmol/L KCl, 1.5 mmol/L MgCl2, and 1 units Taq polymerase. The solution was overlaid with 50 µL of mineral oil and, after an initial denaturation step (3 minutes at 95°C), it was put through 35 cycles each consisting of 1 minute at 94°C, 1.5 minutes at 60°C, and 1.5 minutes at 72°C. A final step at 72°C for 10 minutes to ensure a 3' adenylated PCR product was added. Before cloning, PCR product was purified from a 1.8% agarose gel by Concert Rapid Gel Extraction System (Life Technologies) according to manufacturer's instructions. The purified PCR product was cloned using Eucariotic TOPO TA Cloning Kit Version C (Invitrogen, Groningen, NL) according to manufacturer`s instructions. Plasmid DNA was purified by QIAprep Spin Miniprep Kit (Quiagen, Valencia, CA) according to manufacturer's instructions. Positive clones were identified by digesting plasmid DNA from 10 random colonies with BstXI, according to pcDNA3.1/V5/His-TOPO restriction map (Invitrogen). Briefly, 5 µL of purified plasmid DNA was digested with 1 µL of BstXI (Promega, Madison, WI) in 20 µL of reaction volume. Positive clones were sequenced in an ABI PRISM 310 Genetic Analyzer (PE Biosystems) to identify clones showing the correct 5' 3' orientation. Clones that showed the correct 5' 3' orientation were transfected in HEK 293 cells. Briefly, human kidney HEK293 cells
were grown in 10% fetal bovine serum (FBS)/MEM-alfa medium (Life
Technologies). One day before the transfection, cells were seed in
6-well plates (400 000 cells per well). The transfection was
performed by calcium phosphate method as previously
described.18 Total RNA was purified by TRIzol Reagents
(Life Technologies) according to the manufacturer's instructions.
Reverse transcriptase was made by Reverse Transcription System
(Promega). Briefly, 2 µl of total RNA was treated with 1 unit of RQ1
DNase (Promega) with 40 units of RNasin (Promega) in a total volume of
5 µL. A 2.5 µL aliquot was transcribed at 42°C for 30 minutes.
Before the transcription, the RNA aliquot was keep at 60°C for 15 minutes with 25 pmoles of the reverse primer to permit annealing. A 5 µL aliquot of complementary DNA (cDNA) was amplified by PCR as previously described and 5 µL volumes of the amplification products were separated in a 1.8% agarose-gel electrophoresis in TAE buffer (40 mmol/L Tris-Acetate,1 mmol/L EDTA pH 7.7), containing 0.5 µg/mL
ethidium bromide, and visualized under UV light. The abnormal messenger
RNA (mRNA) splicing product was purified and subjected to direct cycle
sequence analysis using the Taq dye-deoxy terminator method
and an ABI PRISM 310 Genetic Analyzer sequencer (PE Biosystems) according to the manufacturer's instructions.
Case presentation The patient was a 6-year-old white girl whose parents were first cousins (Figure 1). When she was 1 year old, a diagnosis of afibrinogenemia was made because of a posttraumatic and life-threatening bleeding that required hospitalization and blood tranfusions. After that, she had mild bleeding, experiencing posttraumatic muscle hematomas. A very prolonged aPTT and PT, and undetectable fibrinogen levels were observed. As to her family history, no bleeding episode was reported. In the propositus, undetectable levels of both functional (normal range: 160-400 mg/dL) and quantitative (normal range: 160-400 mg/dL) fibrinogen were observed. Both parents of the propositus, as well as her sister, had low levels of functional and quantitative fibrinogen (Figure 1). In addition, single-dimension SDS-PAGE electrophoresis revealed the complete absence of fibrinogen chains in the proband and reduced amounts in family members (Figure 1).
Genetic characterization Fragments covering the entire coding region of A -, B -, and
-chain genes were amplified from patient's and her relatives' genomic DNA. Then, PCR products were subjected to SSCP analysis. All
the amplified segments from A - and B -chain genes in the kindred
proved to be identical to those obtained in the controls. As for the
-chain gene, all amplified segments were identical to those obtained
in the controls, except for the segment spanning the exon 3 and
intron/exon boundary regions. Direct DNA sequence analysis of the PCR
product from the patient showed a homozygous G-to-A transversion at the
fifth nucleotide (nt 2395) after the termination of the exon 3 (Figure
2). The same mutation was found, in a
heterozygous form in samples from both parents and sister. The G-to-A
transition is within the consensus sequence of the donor splice site, a
region believed to be critical for accurate mRNA splicing. In 72 healthy subjects (144 chromosomes), screening for the G-to-A transition
failed to identify this molecular change. Using the Neural Network
Promoter Prediction Tool program
(http://www.fruitfly.org/seq_tools/splice.html)19 to
predict changes induced by mutations in mRNA splicing, we found that
the mutation causes the disappearance of a donor splice site. In the
patient, further sequencing of all coding regions of fibrinogen chain
genes and intron/exon boundaries did not detect any additional mutation.
In vitro messenger RNA splicing To determine whether the G2395A transvertion affects the processing of the -chain gene primary transcript, we transfected HEK
293 cells with both normal and mutant constructs, 766-bp spanning from
92- bp upstream exon 2 to 43-bp downstream exon 4 (Figure 3A). The results of this analysis are
shown in Figure 4. Under these
conditions, HEK 293 cells containing the normal -chain construct
displayed a band of approximately 450 bp, which corresponded fairly
well to the expected splicing product of 458 bp (Figure 3B). In
contrast, HEK 293 cells transfected with the mutant construct showed a
band, shorter than that observed in cells transfected with the normal
construct, of approximately 280 bp (Figure 4). This result suggested
that the splicing product observed was consistent with an aberrant
mRNA, resulting from exon 3 skipping, and expected to be 274 bp (Figure
3C). The skipping of exon 3 predicts the deletion of amino acid
sequence from residues 16 to 75 and the shift of the reading frame at
amino acid 76 with a premature stop codon within exon 4 at position 77. To confirm that the G-to-A transition at the -chain, 2395 nucleotide
causes an abnormal mRNA processing, resulting in skipping of the exon
3, the abnormal band observed in HEK 293 cells transfected with the
mutant construct was isolated and then sequenced. The complete absence
of exon 3 was observed (Figure 5), thus
confirming that the A2395 construct hardly affects mRNA
processing.
The central event in the coagulation of vertebrate blood is the thrombin-catalyzed conversion of fibrinogen into fibrin. The architecture of the fibrinogen molecule has been adapted over the course of several hundred millions of years of evolution. In addition, fibrinogen is also involved in platelet aggregation, endothelial cell injury, blood rheology, and cell proliferation. 20,21 During the past decades a large number of variant fibrinogens have been
reported in more than 300 families and about 90 inherited variants have
been identified in association with fibrinogen
dysfunction.3 These aberrant fibrinogens have been very
useful in the continuous effort to correlate structure and function.
The complete absence of fibrinogen from the bloodstream may be
predicted by many types of abnormal fibrinogen-chain gene structures
and/or proteins. However, despite about 150 patients with congenital
afibrinogenemia described, only very few cases have been
characterized.14,15 Previously identified genetic basis of
congenital afibrinogenemia includes homozygous truncation of the
fibrinogen A We now demonstrate the functional consequences of an additional case of congenital afibrinogenemia. We have investigated a young propositus, offspring of a consanguineous marriage, who presented with undetectable levels of functional and quantitative fibrinogen. Her first-degree relatives had approximately half the normal fibrinogen values and showed a good concordance between functional and immunologic levels. The molecular basis of this condition is a G-to-A transition at
position 2395 in IVS-3 of the The analysis of mRNA isolated from human kidney HEK cells, transfected
with the construct containing the A2395 transition, showed an
abnormally processed transcript. The abnormal mRNA originated from the
skipping of exon 3 is 184 nucleotides shorter than normal. If the
aberrant mRNA were translated, the corresponding peptide would have an
extremely altered amino acid sequence. Skipping of exon 3 predicts the
deletion of the amino acid sequence from residue 16 to 75 and the shift
of the reading frame at amino acid 76 with a premature stop codon
within exon 4 at position 77. Certainly, it would not be a functional
peptide. A peptide originating from its translation would have only 16 amino acids. As a consequence of drastic alterations in its structure,
the truncated Aberrant mRNA transcripts, which could be the result of the activation
of cryptic splice sites or of a read-through of the intervening
sequence were not observed. Several point mutations within the intron
5' splice site consensus region and their effects on gene expression
have been reported in a number of human disorders. Aberrant mRNA
transcripts arising from mutations within the first few nucleotides
have been observed in several patients with In conclusion, in addition to gross gene deletion and impaired
secretion, we have documented a new mechanism of congenital afibrinogenemia, due to abnormal mRNA processing, that affects the
Submitted April 25, 2000; accepted June 9, 2000.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Maurizio Margaglione, Unità di Aterosclerosi e Trombosi, IRCCS "Casa Sollievo della Sofferenza," viale Cappuccini, San Giovanni Rotondo (FG) 71013, Italy; e-mail: ate.tro{at}operapadrepio.it.
1. Al-Mondhiry H, Ehmann WC. Congenital afibrinogenemia. Am J Hematol. 1994;46:343[Medline] [Order article via Infotrieve]. 2. Rabe F, Salomon E. Ueber-faserstoffmangel im Blute bei einem Falle von Hömophilie. Arch Int Med. 1920;95:2-14. 3. Martinez J. Congenital dysfibrinogenemia. Curr Opin Hematol. 1997;4:357-365[Medline] [Order article via Infotrieve]. 4. Henschen A, McDonagh J. Fibrinogen, fibrin and factor XIII. In: Zwaal RFA,Hemker HC, eds. Blood Coagulation. Amsterdam, The Netherlands: Elsevier; 1986:171-241. 5. Hoeprich PD, Doolittle RF. Dimeric half-momlecules of human fibrinogen are joined through disulphide bonds in an antiparallel orientation. Biochemistry. 1983;22:2049-2055[Medline] [Order article via Infotrieve].
6.
Doolittle RF, Watt KWK, Cottrell BA, Strong DD, Riley M.
The amino acid sequence of the 7. Chung DW, Harris JE, Davie EW. Nucleotide sequences of the three genes coding for human fibrinogen. In: Liu CY,Chien S, eds. Fibrinogen, Thrombosis, Coagulation and Fibrinolysis. New York, NY: Plenum; 1990:39-48. 8. Marino MW, Fuller GM, Elder FFB. Chromosomal localisation of human and rat alpha, beta and gamma fibrinogen genes by in situ hybridation. Cytogenet Cell Genet. 1986;42:36-41[Medline] [Order article via Infotrieve]. 9. Buetow KH, Shiang R, Nakamura Y, et al. A multipoint genetic map and new RFLPs for human chromosome 4. Cytogenet. Cell Genet. 1989;51:973.
10.
Kant JA, Fornace AJ, Saxe D, McBride OW, Crabtree GR.
Evolution and organization of the fibrinogen locus on chromosome 4: gene duplication accompanied by transposition and inversion.
Proc Natl Acad Sci U S A.
1985;82:2344-2348
11.
Kant JA, Lord ST, Crabtree GR.
A partial mRNA sequence for human
12.
Yu S, Sher B, Kudrik B, Redman C.
Intracellular assembly of human fibrinogen.
J Biol Chem.
1984;259:10574-10581 13. Ptashne M. How eukaryotic transcriptional activators work. Nature. 1988;335:683-689[Medline] [Order article via Infotrieve]. 14. Neerman-Arbez M, Hornsberger A, Antonarakis SE, Morris MA. Deletion of the fibrinogen alpha-chain gene (FGA) causes congenital afibrinogenemia. J Clin Invest. 1999;103:215-218[Medline] [Order article via Infotrieve].
15.
Duga S, Asselta R, Santagostino E, et al.
Missense mutations in the human 16. Margaglione M, Di Minno G, Grandone E, et al. Raised plasma fibrinogen concentrations in subjects attending a metabolic ward: relation to family history and vascular risk factors. Thromb Haemost. 1995;73:579-583[Medline] [Order article via Infotrieve]. 17. Margaglione M, D'Andrea G, Cappucci G, et al. Detection of factor V Leiden mutation using SSCP. Thromb Haemost. 1996;76:814-815[Medline] [Order article via Infotrieve].
18.
Chen C, Okayama H.
High-efficiency transformation of mammalian cells by plasmid DNA.
Mol Cell Biol.
1987;7:2745-2752 19. Reese MG, Eeckman FH, Kulp D, Haussler D. Improved splice site detection in Genie. J Comput Biol. 1997;4:311-323[Medline] [Order article via Infotrieve]. 20. Cook NS, Ubben D. Fibrinogen as a major risk factor in cardiovascular disease. TIPS. 1990;11:444-451.
21.
Di Minno G, Mancini M.
Measuring plasma fibrinogen to predict stroke and myocardial infarction.
Arteriosclerosis.
1990;10:1-7
22.
Mount SM.
A catalogue of splice junction sequences.
Nucleic Acid Res.
1982;10:459-472
23.
Shapiro MB, Senapathy P.
RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression.
Nucleic Acid Res.
1987;15:7155-7174 24. Krawczak M, Reiss J, Cooper DN. The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences. Hum Genet. 1992;90:41-54[Medline] [Order article via Infotrieve].
25.
Treisman R, Orkin SH, Maniatis T.
Specific transcription and RNA splicing defects in five cloned
26.
Atweh GF, Wong C, Reed R, et al.
A new mutation in IVS-1 of the human
27.
Lapoumeroulie C, Acuto S, Rouabhi S, Labie D, Krishnamoorthy R, Bank A.
Expression of a
28.
Faustino P, Osorio-Almeida L, Romeo L, et al.
Dominantly transmitted
© 2000 by The American Society of Hematology.
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
![]() |
S. Spena, M. L. Tenchini, and E. Buratti Cryptic splice site usage in exon 7 of the human fibrinogen B{beta}-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon RNA, June 1, 2006; 12(6): 948 - 958. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Attanasio, A. David, and M. Neerman-Arbez Outcome of donor splice site mutations accounting for congenital afibrinogenemia reflects order of intron removal in the fibrinogen alpha gene (FGA) Blood, March 1, 2003; 101(5): 1851 - 1856. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Spena, S. Duga, R. Asselta, M. Malcovati, F. Peyvandi, and M. L. Tenchini Congenital afibrinogenemia: first identification of splicing mutations in the fibrinogen Bbeta -chain gene causing activation of cryptic splice sites Blood, December 15, 2002; 100(13): 4478 - 4484. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Okumura, F. Terasawa, H. Tanaka, M. Hirota, H. Ota, K. Kitano, K. Kiyosawa, and S. T. Lord Analysis of fibrinogen gamma -chain truncations shows the C-terminus, particularly gamma Ile387, is essential for assembly and secretion of this multichain protein Blood, May 15, 2002; 99(10): 3654 - 3660. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Iwaki, M. J. Sandoval-Cooper, M. Paiva, T. Kobayashi, V. A. Ploplis, and F. J. Castellino Fibrinogen Stabilizes Placental-Maternal Attachment During Embryonic Development in the Mouse Am. J. Pathol., March 1, 2002; 160(3): 1021 - 1034. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Asselta, S. Duga, S. Spena, E. Santagostino, F. Peyvandi, G. Piseddu, R. Targhetta, M. Malcovati, P. M. Mannucci, and M. L. Tenchini Congenital afibrinogenemia: mutations leading to premature termination codons in fibrinogen Aalpha -chain gene are not associated with the decay of the mutant mRNAs Blood, December 15, 2001; 98(13): 3685 - 3692. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Copyright © 2000 by American Society of Hematology Online ISSN: 1528-0020 | |||||||||