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CLINICAL OBSERVATIONS, INTERVENTIONS, AND THERAPEUTIC TRIALS
From Cedars-Sinai Medical Center, Burns and Allen
Research Institute, Division of Hematology/Oncology, UCLA School of
Medicine, Los Angeles, CA, and Department of Pediatrics, Shinshu
University School of Medicine, Matsumoto, Japan.
Neutrophil-specific granule deficiency (SGD) is a rare congenital
disorder. The neutrophils of individuals with SGD display atypical
bi-lobed nuclei, lack expression of all secondary and tertiary granule
proteins, and possess defects in chemotaxis, disaggregation, receptor
up-regulation, and bactericidal activity, resulting in frequent and
severe bacterial infections. Previously, a homozygous mutation in the
CCAAT/enhancer binding protein- Neutrophil-specific granule deficiency (SGD) is a
rare congenital disorder, possibly inherited in an autosomal recessive
fashion. Individuals with SGD (5 reported worldwide) possess atypical
bi-lobed nuclei and lack expression of secondary and tertiary granule
messenger RNAs (mRNAs) and protein, including lactoferrin,
transcobalamin, gelatinase B, and collagenase.1-8
Additionally, they display a marked decrease in levels of the primary
granule defensins; however, expression of the primary granule genes
myeloperoxidase (MPO) and lysozyme are
unaffected.9,10 The neutrophils of SGD patients are
defective in chemotaxis, dissaggregation, receptor up-regulation, and
bactericidal activity.1-8 More recently, the deficiency in
granule gene expression was extended to eosinophils.11 These cells from SGD patients lacked eosinophil-specific granule contents, including eosinophil cationic protein, eosinophil-derived neurotoxin, and major basic protein.11 Because of these
numerous deficiencies and functional defects, SGD individuals are
severely immunocompromised and develop frequent bacterial infections,
including Pseudomonas aeruginosa and Staphylococcus
aureas.
Since SGD individuals express normal levels of lactoferrin and
transcobalamin in their saliva but not in either their plasma or
neutrophils, the molecular basis for SGD was hypothesized to involve
the mutation of a myeloid-specific transcription
factor.8,12-14 A candidate gene encoding such a
transcription factor is CCAAT/enhancer binding protein- Because of the striking similarities between SGD patients and the
C/EBP
Comparison of the phenotypes of individuals suffering from SGD indicate
that it is likely to be a heterogenous disease and suggests the
possibility of different underlying genetic defects.4 The
purpose of this study is to test the hypothesis that alteration of the
C/EBP SGD proband and genomic DNA isolation
RNA isolation and analysis
PCR of genomic DNA and complementary DNA The primers used to amplify the C/EBP
genomic locus are described in Table 1.
The primers were used in the following combinations to amplify
overlapping regions of the proband's genomic DNA: (1) Prom-S + Prom-AS; (2) R66 + 440; (3) EX2-S + EX2-AS; (4) R66 + NFM-1; and (5) 404 + NFM-1. PFU (Stratagene, La Jolla, CA) or Advantage Taq (Clontech Laboratories, Palo Alto, CA) polymerases were
used to amplify the fragments as described by the manufacturers. The
PCR conditions were as follows: 94°C, 3 minutes; then 35 cycles 94°C, 30 seconds; 60°C (for primer sets 1 and 2) or 64°C (for primer sets 3 through 5), 30 seconds; and 72°C, 2 minutes. To amplify
the complementary DNA (cDNA) of C/EBP , primer pair 404 + NFM-2
was used with a 64°C annealing temperature. The products were cloned
into either pST-Blue (Novagen, Madison, WI) or pcR2.1 (PE Applied
Biosystems, Carlsbad, CA) as described by the manufacturer. Products were sequenced with an ABI Prism Dye Terminator Cycle Sequencing Ready Reaction kit (Invitrogen, Foster City, CA) by means of primer binding sites available in the plasmids (T7, SP6, and
M13R) and the primers described in Table 1 and were analyzed by an ABI
377 sequencing machine.
The primers for MPO, lactoferrin, glyceraldehyde-3-phosphate dehydrogenase, and 18S ribosomal RNA (rRNA) and Southern blot analysis of PCR products were described previously.17,27,28 The primers for amplification of bactericidal/permeability-increasing (BPI) protein were BPI-S, 5'-cagaagggcctggactac-3' (nucleotide [nt] 154-171); BPI-AS, 5'-tgctgcagctggagcag-3' (nt 516-531); and, for hybridization, BPI-Int, 5'-ctgcagaaggagctgaagaggatc (nt 196-219). The primers for amplification of human 18-kd cationic antimicrobial protein (hCAP18) were CAP18-F1, 5'-agctacaaggaagctgtgcttcg-3' (nt 115-137); CAP18-R1, 5'-tcactgtccccatacaccgc-3' (nt 333-352); and, for hybridization, CAP18-PR, 5'-caggattgtgacttcaagaaggacg-3' (nt 299-322). The primers for amplification of human neutrophil peptide 3 (HNP3) were HNP3-S, 5'-gccatgaggaccctcg-3' (nt 48-63); and HNP3-AS, 5'-gcagcagaatgcccagag-3' (nt 332-315). These primers also amplified HNP-1 because the genes are nearly identical.29 The hCAP18 PCR product was subcloned into pcR2.1 (Invitrogen) and sequenced to verify its identity. The insert was excised with EcoRI and used as a probe in Northern blot analysis. Microsatellite sequence polymorphism and single-strand conformation polymorphism analyses The polymorphic CA-repeat microsatellite sequence is located 35-bp 3' of the polyadenylation site of the C/EBP
gene (Figure 1B). For analysis, the microsatellite was amplified by PCR
(as described above) with the use of the primers KO691
(5'-ggcaaagagggcaggacccagc-3') and KO692 (5'-ggtgcagacctagccacatgc-3')
and an annealing temperature of 55°C.30 The reactions
were denatured by heating at 95°C for 5 minutes and electrophoresed
through a denaturing 8M-urea, 5% polyacrylamide gel.
PCR-single-strand conformation polymorphism (PCR-SSCP) analysis with
primers 404 and NFM-1 was performed as described.31 The
products were denatured and electrophoresed through a
nondenaturing polyacrylamide Mutation Detection Enhancement gel (Biowhittaker Molecular Applications, Rockland, ME) containing 10%
glycerol. [33P]-deoxyadenosine triphosphate was added to
the reactions in both procedures to facilitate visualization of the
products by autoradiography (NEN Lifesciences Products,
Boston, MA).
Construction and characterization of mutant C/EBP 32 cDNA by means of a 2-step PCR approach as
described previously.32 Briefly, in one reaction, 100 ng
template (pCMV-C/EBP 32) was amplified with the
vector-specific primer 32N
(5'-tcgccggaattcatgtcccacgggacctactacgagtgtgagccccgg-3') and the
gene-specific primer SGDMUT-AS 5'-ggcctttgagaacgcgcagaggctggccgg-3'). In the second reaction, the vector-specific primer NdelC
5'-agcctggtcgacgtgcccacaatccaccagcca-3') was mixed with the
gene-specific primer SGDMUT-S (5'-gttctcaaaggccccctttggccactgccgc-3'). The products were amplified in a 100-µL reaction by means of
Advantage Taq as described by the manufacturer. The resulting
products (1 µL each) were mixed and amplified by means of the
the 2 vector-specific primers. The full-length product was gel
purified, digested with EcoRI and SalI, and ligated with 100 ng
pCMV-SPORT (Gibco/BRL) cut with EcoRI and SalI. The resulting
transformants were sequenced to verify the presence of the mutation and
verify the integrity of the remainder of the insert.
COS-1 and NIH3T3 cells were maintained in Dulbecco's modified
Eagle's medium supplemented with either 10% fetal bovine serum or
bovine calf serum, respectively. For cellular
localization, COS-1 cells, plated at 70% confluency on a 60-mm dish,
were transfected with 3 µg pCMV-SPORT, pCMV-C/EBP For transcriptional activation assays, NIH3T3 cells were plated in a 12-well dish at 70% confluency. For each triplicate, the plasmids were prepared as a master mix of 1.0 µg pGCSF-R and 0.1 µg pSV40 Renilla Luciferase (Promega, Madison, WI) plus expression vector plus empty vector for a final total of 3 µg DNA. The combinations and amounts of expression vectors are indicated in the legend of Figure 3. The plasmids in 0.5 mL Opti-MEM (Gibco/BRL) were mixed with 15 µL of GenePorter in 0.5 mL Opti-MEM, incubated 45 minutes, and 0.33 mL aliquoted to each well of the 12-well plate (1 µg DNA per well). The pGCSFR-Luc reporter plasmid was kindly provided by Dan Tenen (Harvard Medical School, Boston, MA). At 24 hours post-transfection, cells were lysed in passive lysis buffer, and luciferase activity was measured by means of a dual luciferase assay (Promega).
Frameshift mutation in coding region of C/EBP isoforms p32, p30, p27, and p14
(Figure 1B). The premature termination would result in the loss of the
basic region and leucine zipper domains that are critical for DNA
binding and dimerization, respectively.
Sequencing of the cloned PCR products from the genomic DNA of the
proband indicated the presence of only the mutant allele. This
suggested that the mutation was homozygous. To test this, we used
primer pair 404 and NFM-1 to amplify the region of the mutation from
the genomic DNA of the father and mother. Sequencing of the cloned
products revealed the presence in both parents of wild-type and mutant
sequence (data not shown). The mutation in each parent was an
A-nucleotide insertion as described above for the proband. To confirm
the genotype of the proband and the parents, we performed SSCP analysis
using the above primer pair. Two normal subjects (NHBM-1 and NHBM-2)
were homozygous for the wild-type (E) allele (Figure
2A). The proband was homozygous for the
mutant (e) allele, and the parents were heterozygous for both alleles as indicated by the presence of 2 bands in the parents versus 1 in the
normal controls and proband (Figure 2A). These results support those
observed from sequencing of cloned PCR products.
Mechanism of inheritance of mutant allele The presence of an identical A-nucleotide insertion in one allele from each parent strongly suggested that the parents inherited the same allele from a common distant relative. To test this, we performed microsatellite analysis for a marker that is part of the C/EBP gene locus. It is located 35 bp downstream of the polyadenylation site of the gene.30 The father and mother
possessed 2 patterns (E, wild type; and e, mutant) indicative of
their heterozygous status (Figure 2B). Interestingly, they shared one
pattern (e) while the other was unique to each parent (E1 and E2). The
proband was homozygous for the "e" pattern. The inheritance of an
identical microsatellite and nucleotide insertion indicates that the
same mutant allele was inherited from each parent (Figure 2B). This most likely occurred because the parents inherited the same mutant allele from a common distant relative. The data support a homozygous recessive inheritance of the mutant allele.
The mutant C/EBP would
accumulate in the cytoplasm and lack the ability to activate
transcription from a promoter containing its binding site. To test
this, COS-1 cells were transfected with either empty vector ( ),
wild-type (W), or mutant (S) C/EBP 32 expression vectors.
Whole cell lysates and cytoplasmic (C) and nuclear (N) fractions were
analyzed by Western blot (Figure 3A). The
empty-vector transfectants did not express the C/EBP proteins whereas the expected wild-type and mutant forms were expressed at
similar levels (Figure 3A). The mutant form did not appear to be
unstable; however, it accumulated in the cytoplasmic fraction and not
the nuclear fraction, where the wild-type protein localizes (Figure 3A,
lanes 4-9).
To test the ability of the mutant C/EBP Additional defects in primary and secondary granule gene expression The C/EBP -deficient mice have a significant decrease in
expression of the cathelin-like genes CRAMP and
B9. Because these peptides possess potent bactericidal
activity against gram-negative bacteria and are components of the
secondary granules, we predicted that the human homologue to murine
CRAMP, hCAP18, would be significantly reduced. We examined the
expression of hCAP18 mRNA in the proband and the father using RT-PCR
analysis and found that its expression was 7-fold less in the proband
(Figure 4A). This reduction corresponded with the expected absence of the mRNA encoding the secondary granule protein lactoferrin, which was absent in the proband (Figure 4A). In
contrast, the expression of the primary granule gene MPO was unaffected (Figure 4A).
The primary granule protein BPI possesses very potent antimicrobial activity against gram-negative bacteria.34 Since the expression of the neutrophil primary granule defensins is significantly reduced in SGD patients, we hypothesized that BPI gene expression may be similarly affected. RT-PCR analysis revealed an absence of BPI mRNA expression in the proband (Figure 4A). This corresponded with a significant decrease in the mRNA levels of the primary granule neutrophil defensins HNP-1 and HNP-3 (Figure 4A, HNP1/3) and was consistent with the absence of defensins described previously for this patient.10 These results suggest that significantly reduced levels of BPI protein are present in the proband's primary granules. The lack of expression of secondary and some primary granule
proteins in SGD and C/EBP
In this report, we described a 1-bp insertion in the coding region
of the C/EBP Two other transcription factors known to be important in myeloid cell
differentiation are C/EBP Our study shows that a germline mutation was inherited by the proband.
Characterizing the genotype of the parents revealed that the proband
inherited the same A-nucleotide insertion from each parent in a
homozygous recessive manner. Inheritance of an identical microsatellite
marker that is part of the C/EBP The mutation of C/EBP The striking similarity between the phenotypes of the
C/EBP
We thank Dr Seiji Kawano for critically reading the manuscript; Drs Dorothy Park, Alexey Chumakov, and Seisho Takeuchi for helpful discussions; Dr Dan Tenen for providing the pG-CSFR-luciferase construct; and the patient and her parents for participating in this study.
Submitted July 26, 2000; accepted January 3, 2001.
Supported by National Institutes of Health grant CA26038-20, the Ko-So Foundation, the Horn Foundation, the Parker Hughes Fund, and the C & H Koeffler Fund. A.F.G. is a recipient of a Lymphoma Research Foundation of America fellowship; H.P.K. is a recipient of the Mark Goodson Chair in Oncology and a member of the Jonsson Cancer Center.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Adrian F. Gombart, Cedars-Sinai Medical Center, Division of Hematology/Oncology, UCLA School of Medicine, Davis Bldg 5065, 8700 Beverly Blvd, Los Angeles, CA 90048; e-mail: gombarta{at}csmc.edu.
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M. Shiohara, A. F. Gombart, Y. Sekiguchi, E. Hidaka, S. Ito, T. Yamazaki, H. P. Koeffler, and A. Komiyama Phenotypic and functional alterations of peripheral blood monocytes in neutrophil-specific granule deficiency J. Leukoc. Biol., February 1, 2004; 75(2): 190 - 197. [Abstract] [Full Text] [PDF] |
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S. Gery, A. F. Gombart, Y. K. Fung, and H. P. Koeffler C/EBP{epsilon} interacts with retinoblastoma and E2F1 during granulopoiesis Blood, February 1, 2004; 103(3): 828 - 835. [Abstract] [Full Text] [PDF] |
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T. Andrews and K. E. Sullivan Infections in Patients with Inherited Defects in Phagocytic Function Clin. Microbiol. Rev., October 1, 2003; 16(4): 597 - 621. [Abstract] [Full Text] [PDF] |
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A. F. Gombart, S. H. Kwok, K. L. Anderson, Y. Yamaguchi, B. E. Torbett, and H. P. Koeffler Regulation of neutrophil and eosinophil secondary granule gene expression by transcription factors C/EBPepsilon and PU.1 Blood, April 15, 2003; 101(8): 3265 - 3273. [Abstract] [Full Text] [PDF] |
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B.-T. H. Truong, Y.-J. Lee, T. A. Lodie, D. J. Park, D. Perrotti, N. Watanabe, H. P. Koeffler, H. Nakajima, D. G. Tenen, and S. C. Kogan CCAAT/Enhancer binding proteins repress the leukemic phenotype of acute myeloid leukemia Blood, February 1, 2003; 101(3): 1141 - 1148. [Abstract] [Full Text] [PDF] |
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J. Du, M. J. Stankiewicz, Y. Liu, Q. Xi, J. E. Schmitz, J. A. Lekstrom-Himes, and S. J. Ackerman Novel Combinatorial Interactions of GATA-1, PU.1, and C/EBPepsilon Isoforms Regulate Transcription of the Gene Encoding Eosinophil Granule Major Basic Protein J. Biol. Chem., November 1, 2002; 277(45): 43481 - 43494. [Abstract] [Full Text] [PDF] |
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S. Tavor, P. T. Vuong, D. J. Park, A. F. Gombart, A. H. Cohen, and H. P. Koeffler Macrophage functional maturation and cytokine production are impaired in C/EBPepsilon -deficient mice Blood, March 1, 2002; 99(5): 1794 - 1801. [Abstract] [Full Text] [PDF] |
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