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IMMUNOBIOLOGY
From the Department of Immunology, University Hospital
Rotterdam/Erasmus University Rotterdam, The Netherlands.
Clonality assessment through Southern blot (SB) analysis of
TCRB genes or polymerase chain reaction (PCR) analysis of
TCRG genes is important for diagnosing suspect mature
T-cell proliferations. Clonality assessment through reverse
transcription (RT)-PCR analysis of V In striking contrast to the straightforward
clonality assessment in most mature B-cell proliferations through
single immunoglobulin light chain expression, clonality assessment in
suspect T-cell proliferation is not possible through routine
immunologic marker analysis. For instance, the T-cell receptor (TCR)
expression pattern (TCR Southern blot (SB) analysis is the classical diagnostic method for
clonality assessment. It is highly reliable and in principle can detect every clonal TCR gene rearrangement, provided that optimally
positioned probes and appropriate restriction enzymes are
used.3-6 Nevertheless, several drawbacks limit the routine application of SB analysis in diagnostic laboratories. SB is labor intensive and time consuming, especially when sequential hybridizations are required; furthermore, relatively large amounts of high-quality DNA
are needed for reliable results, which precludes its application on
paraffin-embedded samples. Despite these disadvantages, SB-based detection of clonal TCR rearrangements is the gold standard technique by which to validate other methods for clonality assessment in suspect
T-cell proliferations. Today, polymerase chain reaction (PCR) analysis
of TCR gamma (TCRG) genes is most widely applied; the
relatively restricted combinatorial repertoire of TCRG genes limits the number of required PCR primers. However, this limited repertoire also results in high background amplification of similar rearrangements in normal T cells, thereby reducing the sensitivity of
the assay. Other approaches focus on analysis of TCRB genes or TCRB gene products (RNA, proteins, or both), exploiting
the high diversity in V Here we present 2 different approaches of V Patients, cell samples, and cell lines
TCR Immunophenotyping and analysis of V The samples were studied in more detail for V
DNA and RNA isolation and cDNA synthesis DNA was isolated from frozen MNCs and cell lines as described earlier.3 Total RNA was isolated from all samples using RNAzol (Tel-Test, Friendswood, TX). After oligo dT annealing for 3 minutes at 85°C, 2 µg total RNA was subsequently reverse transcribed in 40 µL volumes for 1 hour at 41°C using Superscript II RT enzyme (Life Technologies, Paisley, United Kingdom) in the presence of dNTPs and RNAguard (Amersham Pharmacia Biotech, Uppsala, Sweden).Southern blot analysis Southern blot (SB) analysis of the TCRB genes was performed as described.3 The 32P-labeled TCRBJ1, TCRBJ2, and TCRBC genomic DNA probes (DAKO, Carpinteria, CA) were used in subsequent hybridizations of EcoRI- and HindIII-digested DNA to determine the rearrangement status of the T-cell lines and patient samples.5PCR amplification Oligonucleotide primers used for amplification of V -C
transcripts are given in Table 2. Most
V family-specific primers were adapted from those published by
Gorski et al,7 but several primers were added to maximize
recognition of V gene segments within a given family and to minimize
cross-annealing to other V gene families at the 3' primer ends. The
C primer was also adapted from Gorski et al.7 The
quality of the studied cDNA samples was determined through RT-PCR
analysis of the ubiquitously expressed ABL gene. PCR
amplification of the TCRB genes of the cDNA samples was
performed in multiple tubes (n = 31), each containing one of the V
family primers and the C primer (Table 2). Reactions were performed
in 20 µL volumes, containing one fortieth (1 µL) of the cDNA
reaction mixture, 2.5 pmol V family primer, 2.5 pmol C primer,
0.2 mM dNTPs, 1.5 mM MgCl2, and 0.2 U AmpliTaq
DNA polymerase in reaction buffer II (Applied Biosystems, Foster City, CA). PCR reaction conditions for the Perkin-Elmer 480 thermal cycler
(Applied Biosystems) were initial denaturation of 3 minutes at 94°C,
followed by 35 to 40 cycles of 1 minute at 94°C, 1 minute at 60°C,
2 minutes at 72°C, and a final extension step of 10 minutes at 72°C.
Heteroduplex analysis After amplification, half (10 µL) the PCR mixtures were loaded on 1% agarose gels to evaluate PCR product formation with the various V -C primer combinations. PCR products were visualized by
ethidium bromide using UV light. The other 10 µL PCR reaction mixture
was subjected to heteroduplex analysis to discriminate between
monoclonal and polyclonal PCR products.11 In short, heteroduplex analysis consisted of 5' denaturation at 94°C
immediately followed by 60' renaturation at 4°C before
electrophoresis on 6% nondenaturing polyacrylamide gels
(polyacrylamide:bisacrylamide 29:1) in 0.5× TBE buffer.11
Ethidium bromide-stained homoduplex or heteroduplex PCR products were
visualized with UV light.
Sequencing If heteroduplex analysis showed PCR products to be clonal, the homoduplexes were excised from the gel and eluted as described.12 Eluted products were either directly sequenced or reamplified in a second-step PCR reaction using the same primers as in the initial reaction. Sequencing was performed on the ABI377 fluorescence sequencer (Applied Biosystems) using the dye terminator cycle sequencing kit and AmpliTaq FS (Applied Biosystems).12 Assignment of V , D , J , and C
gene segments and reading frames of the involved TCRB gene
rearrangements was performed as described.13,14
Molecular and flow cytometric V analysis in clonal T-cell
populations, we used a panel of 12 T-cell lines (Table
3). Although only 4 of these cell lines
showed TCR![]() membrane expression, all had cytoplasmic expression of
TCR chains. SB analysis revealed clonal TCRB gene
rearrangements in all cell lines. In 6 of the T-cell lines, 2 clear
V -C RT-PCR products were found, and in the other 6 only one was
found (Table 3). The V -C products of the various cell lines
contained V gene segments from many distinct V families,
with a slight predominance of V 2-C products (n = 3).
Remarkably, in most identified transcripts, J 2 region gene segments
were used, which fits with the predominance of V -J 2 gene
rearrangements in immature T-cell malignancies.5 Further sequencing of the clonal products revealed that all except one of the
cell lines showed a single in-frame V -C RT-PCR product (Table 3).
In cell line KT-1, both an in-frame V 18-C and an in-frame
V 15-C transcript were found, whereas in the other 5 cell lines
with 2 clonal V -C products only one appeared in-frame.
Flow cytometric V Molecular and flow cytometric V ![]() + T-ALL for their V expression profile using
molecular techniques and flow cytometric analysis (Table 3). V -C
RT-PCR heteroduplex analysis revealed a single clonal in-frame
V -C transcript in 6 of the 16 T-ALL samples. The remaining 10 samples had at least 2 clonal V -C transcripts; in 2 cases, even 3 and 4 clonal V -C transcripts were present, suggestive of subclone
formation with a minor clone (less than 10%) not detectable by SB
(Table 3) but readily detectable by RT-PCR. In contrast to the low
frequency of bi-allelic in-frame V -C products in T-cell lines, 6 of 10 T-ALL samples were found to contain double in-frame V -C
transcripts (Table 3). The identified V -C products in the T-ALL
represented V segments from many V families, with a predominance
of V 3-C products (n = 5). Gene segments of the J 1 region
were identified in 17 V -C products, whereas in 12 products, J 2
segments could be found.
Reactivity with one of the V V analysis in T-cell lines and
T-ALL samples showed that the clonal cell population could easily be
identified by V mAb reactivity or by lack of reactivity with any of
the V mAbs in the panel, the relevant diagnostic application of V gene analysis in daily practice concerns the analysis of postthymic mature lymphoproliferations of the T-cell lineage. For this
reason we chose to study the applicability of V repertoire analysis
in a large series of 47 mature TCR![]() T-cell proliferations (including T-NHL, T-CLL, T-PLL, and T-LGL) that, in the past decade, had been sent to our laboratory with a strong suspicion of clonality (Table 4). All samples were indeed found
to contain clonal TCRB rearrangements in SB analysis. Next,
the samples were subjected to V -C RT-PCR, followed by
heteroduplex analysis to confirm or exclude the clonal character of the
obtained RT-PCR products. This revealed the presence of dominant clonal
V -C transcripts in all 42 samples from which RNA could be
isolated. In 26 cases only a single transcript was detectable, whereas
in 14 cases double V -C products were seen (Table 4). Remarkably,
in 2 samples (93-067 and 96-019), 3 dominant clonal products were
apparent. SB analysis of case 96-019 already suggested more than 2 rearranged alleles, but in case 93-067 this was not anticipated from
the SB pattern because no additional bands were apparent. Further sequencing in the latter case revealed that the 3 PCR products contained distinct junctional regions, excluding cross-annealing of
primers as an explanation for the occurrence of multiple
bands.
To compare the molecular and flow cytometric V Flow cytometric analysis of the V
Comparison of the data from molecular and flow cytometric analyses
revealed complete concordance between the identified in-frame V In 16 cases no single V V -C RT-PCR products could be identified, in several samples a whole array of additional V -C products of variable, but
mostly weak, intensity were found, next to the dominant clonal V -C product(s), as exemplified in Figure
3. Close examination of these oligoclonal
samples disclosed that virtually all were diagnosed as T-LGL leukemias,
whereas only a few concerned patients with T-CLL or Sézary
syndrome. Despite their oligoclonal character, in all cases a dominant
clonal cell population was observed, as evidenced by the flow
cytometric data.
V repertoire of
TCRB genes has been put forward as a diagnostic strategy for
clonality studies in suspect T-cell proliferations. This approach can
also be used to study the actual TCRB repertoire in other
disease states with high T-cell activity, such as autoimmune
diseases,18-22 immunodeficiencies,23-25 and
alloreactivity in patients who have undergone
transplantation.26-28 Until recently, this type of
analysis mainly concerned PCR-based assays.18,21,22,26,29,30 However, a much faster and more quantitative analysis of the TCR repertoire is now possible through the use of mAbs directed against the V domains of TCR![]()
molecules, which cover 65% to 70% of V domains in blood T
lymphocytes of children and adults.10,31-34
We performed parallel molecular and flow cytometric V Flow cytometric V The results in this study suggest that detection of a T-cell population
with restricted V Finally, a major advantage of flow cytometric V Oligoclonality of T-LGL proliferations During analysis of the mature T-cell proliferations, we observed that especially in many T-LGL samples, multiple weak additional products were seen next to 1 or 2 V -C transcripts belonging to
the immunophenotypically dominant clone. Limited sequencing of these
clonal products did not show similar V gene segments or junctional
region sequences. This observation provides further evidence for the
hypothesis raised earlier, which is that T-LGL derive from polyclonal
or oligoclonal proliferations of antigen-activated cytotoxic T-cells
and that, in some situations, transformation or dysregulation of
growth or apoptosis results in T-LGL leukemia showing a more restricted
and dominant V usage (expressed as percentage MNCs) and a raised
absolute cell count of abnormal cells.42-45 Furthermore,
the generally indolent course of this type of T-cell proliferation and
the relatively lower white blood cell counts (compared to T-CLL and
T-PLL proliferations) are also in line with a pretransformation state
of oligoclonal proliferations of activated T-cells.
Monoreactivity in T-ALL and mature T-cell populations Remarkably, in many T-ALL (6 of 10) and mature T-cell proliferations (at least 9 of 16) with bi-allelic TCRB gene rearrangements and, to a lesser extent, in T-cell lines (1 of 6 cases), double in-frame transcripts were observed. In theory this could lead to double V expression in particular samples. However, in virtually all
cases that could be evaluated, the clonal T-cell population reacted
with only one of the V mAbs; monoreactivity cannot be proven
formally in a few samples because of the lack of appropriate V
antibodies in the panel. In case 95-121, the 2 identified in-frame V -C transcripts appeared to be derived from 2 distinct T-cell populations, given the results of flow cytometric analysis. Taken together, the data strongly suggest that in cases with double in-frame
V -C products, monospecificity of the TCR is guaranteed by
regulation at the level of translation of TCR chains or by preferential pairing of one TCR chain with the involved
TCR chain.
We conclude from our data that flow cytometric V
We thank Prof dr R. Benner for support and Ms J. Boon for secretarial assistance. We also thank the following clinicians and scientists for submitting samples from patients with suspect mature T-cell proliferations: H. J. Adriaansen, P. B. Berendes, J. W. Gratama, E. Harthoorn-Lasthuizen, C. van der Heul, J. van Helden, J. C. Kluin-Nelemans, P. J. Lugtenburg, C. Lynas, L. Marcelis, E. Moreau, P. Sonneveld, W. Slieker, J. W. Smit, H. Storm, P. Vandenberghe, M. B. van `t Veer, and G. Verhoef.
Submitted November 8, 2000; accepted March 9, 2001.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Anton W. Langerak, Department of Immunology, University Hospital Rotterdam, Erasmus University Rotterdam, 3000 DR Rotterdam, The Netherlands; e-mail:langerak{at}immu.fgg.eur.nl.
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© 2001 by The American Society of Hematology.
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