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CLINICAL OBSERVATIONS, INTERVENTIONS, AND THERAPEUTIC TRIALS
From the Institute of Hematology and Medical Oncology
L. e A. Seràgnoli, University of Bologna, Italy.
The inv(16) cytogenetic subtype of acute myeloid leukemia (AML) has
a relatively good prognosis. Many patients achieve complete remission
(CR). The prognostic uncertainty of negative qualitative reverse
transcription-polymerase chain reaction (RT-PCR) assays suggests the
need to identify prognostically significant critical thresholds by
real-time RT-PCR. A reliable and sensitive (10 Inversion of chromosome 16, inv(16)(p13q22), and
its related translocation, t(16;16)(p13;q22), are recurrent
rearrangements found in a subset of patients with acute myeloid
leukemia (AML), particularly the M4Eo subtype.1-4 Inv(16)
is associated with relatively good long-term, disease-free survival
(DFS).5,6 It generates a chimeric mRNA transcript,
CBF Messenger RNA analysis by reverse transcription-polymerase chain
reaction (RT-PCR) can help define leukemic subsets and provide potentially valuable diagnostic and prognostic
information.11 Qualitative RT-PCR reveals the presence of
detectable levels of minimal residual disease (MRD) in patients in
complete clinical remission (CR) after induction
chemotherapy.12 Introduction of real-time
RT-PCR13 should allow routine quantitation of the transcript. The 5'-3' nuclease activity of the Taq polymerase cleaves
an internal fluorogenic probe specific for the target sequence, causing
the emission of a fluorescent signal that can be detected during
amplification. This allows rapid quantitation of specific RT-PCR
products with a dynamic detection range of more than 5 orders of
magnitude. Several groups have used real-time RT-PCR with TaqMan
technology to quantitate MRD with leukemia-specific chromosome
aberrations such as t(9;22), t(l5;17), and t(8;21).14-16
Most patients with inv(16) AML treated in our institute achieved
long-term CR.17,18 However, several groups have reported persistence of the chimeric transcript even after allogeneic bone marrow transplantation (BMT).12,19-21 These considerations
prompted us to investigate whether it is possible to predict relapse
among patients who have achieved CR, and under what conditions patients can be considered in a curable state. To do this, we tested the prognostic potential of qualitative and quantitative RT-PCR analysis of
the CBF Patients and therapy
Cytogenetic analysis
Samples and RNA isolation Mononuclear cells from samples were obtained by Ficoll-Hypaque density gradient centrifugation and were stored at 80°C in guanidinium thiocyanate. Total cellular RNA was extracted as previously described.18
Qualitative RT-PCR analysis RT-PCR. Qualitative RT-PCR was routinely performed at diagnosis and during follow-up as previously described.18 Whenever possible, these results were confirmed by means of the recently defined BIOMED-1 Concerted Action protocol.22 RT-PCR of ABL control gene. To assess the quality and quantity of the amplifiable RNA isolated from samples, RT-PCR of ABL gene transcripts was performed as previously described.18 Criteria for qualitative RT-PCR negativity.
Stringent criteria for negativity were applied: no
amplification of the CBF Reproducibility and accuracy of assays. Positive and negative controls were included in all assays. In particular, RNA from the time of diagnosis was used for positive control. Negative controls included reactions with no RNA or no complementary DNA (cDNA) or HL60 cell line. Precautions taken to avoid contamination included the use of a specifically designed UV flow cabinet and PCR-designated pipettes with filtered tips. All tests were conducted twice to confirm the results. Real-time RT-PCR Real-time RT-PCR was retrospectively performed using a method previously described.13,16Primers and probe.
Figure 1 reports the primers and probes
used for real-time RT-PCR quantification of the CBF
PCR conditions. Reaction mixtures of 25 µL contained 12.5 µL TaqMan buffer A with the ROX dye as the passive reference, 5 mM MgCl2, 200 µM dATP, dCTP, dGTP, 400 µM dUTP, 1.25 U AmpliTaq Gold DNA polymerase, 0.5 U AmpErase uracil N-glycosylase (UNG), 300 nM forward and reverse primers, 200 nM specific TaqMan probe, and 6 µL plasmid or cDNA (diluted 1:3). All reagents were from Perkin Elmer, Applied Biosystem. All real-time RT-PCR experiments were performed at least in triplicate. Before determining the sensitivity of the target, the real-time RT-PCR set-up was optimized. In particular, the amounts of forward and reverse primer were determined so as to produce the highest Rn and the
lowest threshold cycle (CT). In the primer-matrix
experiment, 9 combinations of 50, 300, and 900 mM for each primer were
tested in triplicate: 50/50, 50/300, 50/900; 300/50, 300/300, 300/900;
900/50, 900/300, 900/900. RT-PCR reactions were set in MicroAmp optical
96-well reaction plates closed with MicroAmp optical caps (Perkin
Elmer/Applied Biosystem). After 2 minutes at 50°C to allow the
destruction by UNG of potential contaminant RT-PCR products and 10 minutes at 95°C to denature UNG and activate AmpliTaq Gold, the
amplification was carried out by 50 cycles at 95°C for 15 seconds and
65°C for 60 seconds in the ABI/Prism 7700 Sequence Detector System
(Applied Biosystem, Perkin Elmer).
Construction of the standard curves for
CBF
Statistical analysis Overall survival (OS) and DFS probability were calculated from the date of diagnosis to the last contact or death, and to death or relapse, respectively, according to the Kaplan-Meier method.25 Comparisons of the CBF -MYH11/ABL ratios at
diagnosis and relapse and during treatment and CR were performed by the Kruskal-Wallis test. 2 analysis was used for
binary variables. All analyses were performed using the SPSS software
package (SPSS, Chicago, IL).
Clinical follow-up, survival, and status Figure 3 reports the clinical outcomes and OS and DFS of the 18 patients who underwent ablative chemotherapy. At a median follow-up of 51 months (range, 4-115 months), 13 (72%) patients are in first CR and 3 (17%) are in second CR. Thirteen (72%) patients achieved qualitative RT-PCR negativity after induction chemotherapy, and 3 (17%) achieved it after consolidation chemotherapy. Figure 3 illustrates that the OS and DSF probabilities at 3 years were 82% (95% confidence interval [CI], 63%-100%) and 63% (95% CI, 40%-87%), respectively. In either case, no events were recorded after the 26th month.
Cytogenetic analysis Cytogenetic results are summarized in Figure 4A. All 21 patients showed inv(16)(p13q22) at diagnosis, and 5 also had additional karyotypic abnormalities (Table 1). In one patient (patient 1), an additional translocation was detected at relapse [46,XX, inv(16)(p13q22), t(2;17) (q31;p13)].
Qualitative RT-PCR analysis Qualitative RT-PCR results are summarized in Figure 4A. Assays of all 188 samples from the 21 patients were routinely studied. Of these, 172 samples were also fully studied according to the BIOMED-1 Concerted Action protocol22; the 16 samples that turned out to be ABL-negative were excluded from subsequent analysis. Log sensitivities of the transcript primer sets were 10 4 for types A, C, D,
and E.
At diagnosis, 18 patients displayed type A transcript, one had
type D, one had type E, and one had a type C transcript (GenBank accession numbers AF249898, AF249897, AF251768,
respectively).26 At follow-up, 9 of 149 samples taken from
the 18 patients who received ablative chemotherapy were positive for
CBF Application of real-time RT-PCR for CBF Rn values were found for each primer
combination. CT values were comparable. The 300/300 mM
primer combination was used in all experiments. As can be seen from
Figure 1, for the 3 types of transcript, the TaqMan probe and the
forward primer were located in exon 5 of the CBF gene.
Reverse primers were located in exons 12, 8, and 7 of the
MYH11 gene for transcript types A, D, and E, respectively.
The number of target molecules of transcript in each sample was
expressed as a percentage ratio between CBF -MYH11 and ABL in 6 µL
cDNA. Three patients (patients 19-21) were tested at diagnosis only.
For 16 patients, transcript levels were quantified in sequential bone
marrow or peripheral blood samples, but for 2 patients (patients 1 and
10), insufficient amounts of material precluded transcript
quantification at diagnosis and during follow-up.
Sensitivity of real-time RT-PCR for CBF Reliability of real-time RT-PCR for CBF Real-time RT-PCR quantification of CBF Significance of CBF -MYH11/ABL ratios in terms of
samples obtained at any time during or after treatment in the absence
of subsequent relapse (group A), those obtained at any time during
follow-up before relapse (group B), and those obtained at the time of
diagnosis or relapse (group C). Results are summarized in Figures 4B
and 5. The Kruskal-Wallis test showed
that the differences among the 3 groups were all highly significant
(P < .0001). At diagnosis or relapse (group C), the
CBF -MYH11/ABL ratio ranged from 19% to 60%. Ratios (n = 101)
obtained during or after treatment from patients who did not have
relapses (group A) were always 0.25% or less (minimum, 0%). By
contrast, ratios obtained during or after treatment from patients who
did have relapses (group B) were always 0.12% or more (maximum,
7.1%). Figure 5 illustrates these 2 thresholds and the overlapping
gray zone. Among the 6 assays that fell within the gray zone, 3 refer
to 2 patients (patients 6, 15) who had relapses and 3 to 3 patients
(patients 5, 8, 12) who remained in CR (Figure 4B).
Among the distinct subset of AML patients carrying
inv(16)(p13q22), a high percentage achieves CR.12,17,18 It
is thought that some of these patients may be considered cured. This
report on a large series of patients with inv(16) AML examines what, to
our knowledge, is the longest clinical, cytogenetic, and molecular follow-up thus far published. Our results suggest that the high proportion of patients who remain in CR for as long as 2 years (89% in
our series) seems to have a very good prognosis because none, at the
time of writing, have had relapses. To search for prognostic
indications at a molecular level, we developed primer-probe combinations that permitted effective real-time RT-PCR quantification of CBF The clinical results from our series are fully in line with the concept that long-term CR can be achieved in a high proportion of patients with inv(16) AML. At a median follow-up of 51 months (range, 4-115 months), 16 of 18 (89%) of the patients are stable in either first (13 patients) or second (3 patients) CR, with a DFS probability of 63% at 3 years. No relapses or deaths have been observed after the 26th month. These encouraging data highlight the need to assess whether any or all patients who achieve durable CR can be considered cured. At qualitative RT-PCR, most of our patients achieved molecular remission, defined as undetectability of the neoplastic transcript at the sensitivity threshold level (1:104) permitted by the BIOMED-1 Concerted Action protocol.22 Probably because of different sensitivity methods applied,12,19-21 some authors reported that most patients with AML inv(16) show persistence of minimum residual disease after CR. Using BIOMED-1 criteria, 72% of our patients achieved qualitative molecular remission after induction chemotherapy, and 17% achieved it after consolidation chemotherapy. The ultimate prognostic impact of qualitative RT-PCR negativity is uncertain.12 Our series confirmed that patients who achieve this status are still susceptible to eventual relapse. Indeed, all 3 of our patients who had relapses after receiving ablative chemotherapy had had at least one negative qualitative RT-PCR assay. Like other authors,27 we found that qualitative RT-PCR did not allow cutoff levels to be identified for prognostic purposes. Using TaqMan technology, we therefore set up a quantitative real-time
RT-PCR assay. To our knowledge, this is the first time that real-time
RT-PCR has been applied to the analysis of inv16. Our data
demonstrate that the method used is reliable and consistently more
sensitive than qualitative RT-PCR (1:105 vs
1:104). Indeed, a high proportion of the samples in which
the CBF When we analyzed the CBF We also found that some samples were negative at qualitative and
quantitative RT-PCR. This finding may shed some light12 on
the prognostic significance of an undetectable CBF In conclusion, our series suggests that most patients with inv(16) AML
can achieve durable CR after ablative chemotherapy and that many
achieve negative assays at qualitative RT-PCR. The real-time RT-PCR
assay set up by us can be recommended as a reliable and more sensitive
method for routine monitoring of minimum residual disease in such
patients. Our data suggest that samples with CBF
We thank SANCO (European Concerted Action Project), Dr Clara Bloomfield, and A. K. Burnett for their valuable suggestions. We thank Dr Achille Ambrosetti and Dr Domenico Russo of the Institutes of Hematology of the Universities of Verona and Udine, respectively, for providing the material for the molecular analysis of 2 patients. We also thank Barbara Giannini, Simona Soverini, and Maria Stella Zagarella for expert technical assistance, and Robin M. T. Cooke for helping work up the manuscript.
Submitted April 26, 2001; accepted September 12, 2001.
Supported by Associazione Italiana per la Ricerca sul Cancro, MURST 40% (Sante Tura) (AML), Associazione italiana contro le leucemie, and the Italian Consiglio nazionale delle ricerche target.
The publication costs of this article were defrayed in part by page charge payment. Therefore, and solely to indicate this fact, this article is hereby marked "advertisement" in accordance with 18 U.S.C. section 1734.
Reprints: Giovanni Martinelli, Institute of Hematology and Medical Oncology L. A. Seràgnoli, University of Bologna, H. S. Orsola-Malpighi, Via Massarenti 9-40138 Bologna, Italy; e-mail: gmartino{at}kaiser.alma.unibo.it.
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S. Meshinchi and R. J. Arceci Prognostic Factors and Risk-Based Therapy in Pediatric Acute Myeloid Leukemia Oncologist, March 1, 2007; 12(3): 341 - 355. [Abstract] [Full Text] [PDF] |
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