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Blood, Vol. 110, Issue 6, 1770-1778, September 15, 2007
Hot spots of retroviral integration in human CD34+ hematopoietic cells
Blood Cattoglio et al.
110: 1770
Supplemental materials for Cattoglio et al, Vol 110, Issue 6, 1770-1778
Files in this Data Supplement:
- Table S1. List of all known genes (University of California Santa Cruz UCSC definition) hit by retroviral (RV) proviruses (PDF, 92.7 KB) -
Inside or at a distance of ≤30 kb upstream or downstream, in human CD34+ hematopoietic stem/progenitor cells (HSCs) (PDF, 92.7 KB)
- Table S2. List of all known genes (UCSC definition) hit by lentiviral (LV) proviruses, inside or at a distance of ≤30 kb upstream or downstream, in human CD34+ HSCs (PDF, 86.4 KB)
- Table S3. List of all sequences inside or at a distance of ≤30 kb upstream or downstream known genes (UCSC definition) in a control library of LM-PCR-amplified human CD34+ HSC DNA (PDF, 58.9 KB)
- Table S4. Ingenuity network analysis of genes targeted by RV and LV integrations (PDF, 256 KB) -
Networks with the best Ingenuity score and made exclusively of genes targeted by RV or LV integrations are shown.
- Table S5. Complete list of hot spots of RV and LV integrations, and of “false-positive” hot spots (controls) generated by applying the definition criteria to the control list of sequences (PDF, 241 KB) -
Range indicates the maximum distance between hits contained in each hot spot.
- Table S6. Contribution of different groups of RV integrations (datasets) to the integrations generating the RV hot spots (PDF, 102 KB)
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