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Blood, Vol. 111, Issue 4, 2347-2353, February 15, 2008
Gene alteration and precursor and mature microRNA transcription changes contribute to the miRNA signature of primary effusion lymphoma
Blood O'Hara et al.
111: 2347
Supplemental Materials for: O’Hara et al.
Files in this Data Supplement:
- Table S1: Summary statistics for Figure 1B (PDF, 37 KB) -
Abbreviations are standard deviation (SD), standard error of mean (SEM), 95% confidence interval (CI). Differences are explained in fold standard deviation (x SD).
- Table S2: miRNA signature of PEL in decreasing order of abundance (PDF, 42 KB)
- Table S3. Cell lines (PDF, 24 KB)
- Figure S1: Individual correlations reveal miRNA deletions (PDF, 115 KB) -
Shown are individual scatter plots of the relative gene copy number (dCT) for a set of PEL cell lines. These were from left to right and top to bottom : BC-1, BC-3, BCBL-1, BCP-1, DG75, JSC-1, VG-1. Dots indicate individual miRNA genes and lines the regression. Dots that deviated dramatically from the regression line indicate a deletion or amplification.
- Figure S2: Exemplary data (PDF, 127 KB) -
(A) Picture of the amplification curves. (B) picture of an Agarose gel of the products. (C) Quantitation for selected miRNAs (bottom) for a set of PEL cell lines indicated by the different colors.
- Figure S3: Analysis of hsa-mir-222 and hsa-mir-15a target BCL-2 in PEL (PDF, 60 KB)
- Figure S4: Summary data and Euklidian-metricbased clustering of dCT(U6) (PDF, 95 KB)
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