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Blood, Vol. 113, Issue 7, 1526-1534, February 12, 2009
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Human basophils and eosinophils are the direct target leukocytes of the novel IL-1 family member IL-33
Blood Pecaric-Petkovic et al. 113: 1526

Supplemental materials for Pecaric-Petkovic et al

Sample preparation, gel electrophoresis and Western blot analysis
Cells (0.5–1 × 106 cells) were washed twice with ice-cold PBS, followed by the addition of 100% TCA to a final concentration of 10%. Proteins were allowed to precipitate on ice for 10 minutes, followed by a short sonication in order to prevent clumping of precipitated proteins. Protein precipitates were pelleted by centrifugation at 10,000 g for 15 min at 4°C. The supernatant was discarded and the protein precipitates were washed with 1 ml of cold aceton (−20°C). To ensure complete TCA removal, protein pellets resuspended in aceton were briefly sonicated until the suspension was homogeneous. Proteins were pelleted again by centrifugation. After an additional wash with acetone, pellets were taken directly in 1× reducing NuPAGE LDS Sample buffer (Invitrogen), and subjected to gel electrophoresis. To estimate protein concentration of the samples, an aliquot of the acetone suspension of each sample was pelleted separately and diluted in water. Protein concentration measurements were carried out using a commercial BCA Protein Assay (PIERCE). Proteins (15–20 µg per line) were separated in NuPAGE 12% Bis-Tris gels using MOPS SDS running buffer (Invitrogen) and electro-transferred onto polyvinylidene-difluoride membranes (Invitrolon, Invitrogen). Prestained molecular weight markers (Invitrogen) were included in each gel. Membranes were cut accordingly for the analysis of proteins of different molecular weight, blocked with 5% non-fat milk in Tris-buffered saline (TBS) containing 0.1% Tween-20, and probed overnight with specific antibodies. Secondary horseradish peroxidase-conjugated goat anti-mouse or goat anti-rabbit antibodies were from Bio-Rad (Bio-Rad, Switzerland; 1:3000 dilution). Immunoreactive bands were visualized using enhanced chemiluminsecence detection system (ECL-Kit, PIERCE) and Luminescent Image Analyzer (LAS3000, Fujifilm). Analysis of active, phosphorylated forms of proteins of similar molecular weight was always performed using non-stripped fresh duplicate membranes. To control the total amount of specific proteins, membranes were stripped by incubation in 0.2 N NaOH for 15–30 min at room temperature, blocked and reprobed with the antibodies which recognize total proteins. When indicated, for loading controls, stripped membranes were incubated with an anti–β-actin antibody. The quantitative analysis was performed using AIDA software (Fujifilm). Fold change of kinase activity (Erk’s and p38) was calculated as relative ratio of the band intensity value of phosphorylated form of the kinase in individual sample divided by the band intensity value of the phosphorylated kinase from control sample. The band intensity values of the phosphorylated form of the kinase were normalized to that of the total form. Western blot analysis was performed at least times using cells of different donors. Representative experiment are shown in the different figures. The following primary antibodies were used all at a 1:1000 dilution: phospho-Stat3 (Tyr705) rabbit mAb (D3A7), #9145; phospho-Stat5 (Tyr694) rabbit Ab, #9351; phospho-p44/42 MAPK (Thr202/Tyr204) rabbit mAb (20G11) #4376; p44/42 MAPK rabbit Ab, #9125; phospho-p38 MAPK (Thr180/Tyr182) rabbit Ab, #9211; p38 MAPK rabbit Ab, #9212; phospho–IκB-α (Ser32) rabbit Ab, #9241; IκB-α rabbit Ab, #9242; phospho–cPLA2 α (Ser505) rabbit Ab, #2831 (all from Cell Signaling); ST2 affinity purified goat Ab, AF523 (R&D); granzyme B mouse mAb (2C5), sc-8022 Santa-Cruz.

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