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Prepublished online as a Blood First Edition Paper on August 15, 2002; DOI 10.1182/blood-2002-06-1792.
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Blood, 1 January 2003, Vol. 101, No. 1, pp. 163-167
HEMOSTASIS, THROMBOSIS, AND VASCULAR BIOLOGY
A new locus on chromosome 18 that influences normal variation in
activated protein C resistance phenotype and factor VIII activity and
its relation to thrombosis susceptibility
José Manuel Soria,
Laura Almasy,
Joan Carles Souto,
Alfonso Buil,
Elisabeth Martínez-Sánchez,
José Mateo,
Montserrat Borrell,
William H. Stone,
Mark Lathrop,
Jordi Fontcuberta, and
John Blangero
From the Unitat d'Hemostàsia i Trombosi,
Hospital de la Santa Creu i Sant Pau, Barcelona, Spain; Southwest
Foundation for Biomedical Research, San Antonio, TX; and the Centre
National de Genotypage, Evry, France.
Activated protein C resistance (APCR) is the most prevalent risk
factor for thrombosis, accounting for 20% to 60% of familial thrombophilia. A mutation in the F5 gene, factor V Leiden
(FVL), is a major determinant of pathological APCR in some populations. However, APCR predicts risk for thrombosis independently of FVL. This
suggests that other genetic factors may influence risk of thrombosis
through quantitative variation in APCR. To search for these unknown
loci, we conducted a genome-wide linkage screen for genes affecting
normal variation in APCR in the 21 Spanish families from the Genetic
Analysis of Idiopathic Thrombophilia (GAIT) project. Conditional on
FVL, the strongest linkage signal for APCR was found on chromosome 18 near D18S53. Bivariate linkage analyses with a genetically correlated
trait, levels of clotting factor VIII, strengthened evidence for the
chromosome 18 quantitative trait locus (QTL; logarithm of the odds
[LOD], 4.5; P = 3.08 × 10 5).
However, the region on chromosome 1 that contains the F5
structural gene showed little evidence of linkage to APCR (LOD, < 1).
This indicates that apart from the FVL, the F5 locus itself
plays a relatively minor role in normal variation in APCR, including
the HR2 haplotype polymorphisms. A second bivariate analysis of APCR with thrombosis liability suggested that this QTL also influences the
risk of thrombosis (P = .0016). These results indicate
that a locus on chromosome 18 pleiotropically influences normal
variation in the APCR phenotype and factor VIII (FVIII) levels
as well as susceptibility to thrombosis. Importantly, there are no
known thrombosis-related candidate genes in this region, implying that this QTL represents a completely novel thrombosis risk factor.

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