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Blood, 1 April 2004, Vol. 103, No. 7, pp. 2771-2778.
Prepublished online as a Blood First Edition Paper on December 18, 2003; DOI 10.1182/blood-2003-09-3243.
Previous Article | Table of Contents | Next Article 
NEOPLASIA
Gene expression profile of adult T-cell acute lymphocytic leukemia identifies distinct subsets of patients with different response to therapy and survival
Sabina Chiaretti,
Xiaochun Li,
Robert Gentleman,
Antonella Vitale,
Marco Vignetti,
Franco Mandelli,
Jerome Ritz, and
Robin Foa
From the Departments of Medical Oncology and Biostatistical Science, Dana-Farber Cancer Institute, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston MA; and Dipartimento di Biotecnologie Cellulari ed Ematologia, University "La Sapienza," Rome, Italy.
Gene expression profiles were examined in 33 adult patients with T-cell acute lymphocytic leukemia (T-ALL). Nonspecific filtering criteria identified 313 genes differentially expressed in the leukemic cells. Hierarchical clustering of samples identified 2 groups that reflected the degree of T-cell differentiation but was not associated with clinical outcome. Comparison between refractory patients and those who responded to induction chemotherapy identified a single gene, interleukin 8 (IL-8), that was highly expressed in refractory T-ALL cells and a set of 30 genes that was highly expressed in leukemic cells from patients who achieved complete remission. We next identified 19 genes that were differentially expressed in T-ALL cells from patients who either had a relapse or remained in continuous complete remission. A model based on the expression of 3 of these genes was predictive of duration of remission. The 3-gene model was validated on a further set of T-ALL samples from 18 additional patients treated on the same clinical protocol. This study demonstrates that gene expression profiling can identify a limited number of genes that are predictive of response to induction therapy and remission duration in adult patients with T-ALL. (Blood. 2004;103:2771-2778)

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|
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|
 |
|

|
 |

|
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|
 |
|

|
 |

|
 |
 
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|
 |
|

|
 |

|
 |
 
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|
 |
|

|
 |

|
 |
 
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[Abstract]
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[PDF]
|
 |
|

|
 |

|
 |
 
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|
 |
|

|
 |

|
 |
 
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[Full Text]
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|
 |
|

|
 |

|
 |
 
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|
 |
|

|
 |

|
 |
 
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9(1):
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|
 |
|

|
 |

|
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2008(1):
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|
 |
|

|
 |

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|
 |
|

|
 |

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 |
 
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[Full Text]
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|
 |
|

|
 |

|
 |
 
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[Full Text]
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|
 |
|

|
 |

|
 |
 
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104(14):
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[Abstract]
[Full Text]
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|
 |
|

|
 |

|
 |
 
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[Abstract]
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|
 |
|

|
 |

|
 |
 
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[Full Text]
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|
 |
|

|
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|
 |
|

|
 |

|
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|
 |
|

|
 |

|
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[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
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August 1, 2006;
108(3):
1050 - 1057.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
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July 1, 2006;
22(13):
1600 - 1607.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
H. Yang and E. L. Reinherz
CD2BP1 Modulates CD2-Dependent T Cell Activation via Linkage to Protein Tyrosine Phosphatase (PTP)-PEST
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May 15, 2006;
176(10):
5898 - 5907.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
O. Margalit, H. Amram, N. Amariglio, A. J. Simon, S. Shaklai, G. Granot, N. Minsky, A. Shimoni, A. Harmelin, D. Givol, et al.
BCL6 is regulated by p53 through a response element frequently disrupted in B-cell non-Hodgkin lymphoma
Blood,
February 15, 2006;
107(4):
1599 - 1607.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
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Blood,
January 15, 2006;
107(2):
473 - 479.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
C.-H. Pui and W. E. Evans
Treatment of Acute Lymphoblastic Leukemia
N. Engl. J. Med.,
January 12, 2006;
354(2):
166 - 178.
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
A. S. M. Yong, R. M. Szydlo, J. M. Goldman, J. F. Apperley, and J. V. Melo
Molecular profiling of CD34+ cells identifies low expression of CD7, along with high expression of proteinase 3 or elastase, as predictors of longer survival in patients with CML
Blood,
January 1, 2006;
107(1):
205 - 212.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
E. J. Jabbour, S. Faderl, and H. M. Kantarjian
Adult Acute Lymphoblastic Leukemia
Mayo Clin. Proc.,
November 1, 2005;
80(11):
1517 - 1527.
[Abstract]
[PDF]
|
 |
|

|
 |

|
 |
 
S. Chiaretti, X. Li, R. Gentleman, A. Vitale, K. S. Wang, F. Mandelli, R. Foa, and J. Ritz
Gene Expression Profiles of B-lineage Adult Acute Lymphocytic Leukemia Reveal Genetic Patterns that Identify Lineage Derivation and Distinct Mechanisms of Transformation
Clin. Cancer Res.,
October 15, 2005;
11(20):
7209 - 7219.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
J. Roman-Gomez, A. Jimenez-Velasco, X. Agirre, F. Prosper, A. Heiniger, and A. Torres
Lack of CpG Island Methylator Phenotype Defines a Clinical Subtype of T-Cell Acute Lymphoblastic Leukemia Associated With Good Prognosis
J. Clin. Oncol.,
October 1, 2005;
23(28):
7043 - 7049.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
J. Soulier, E. Clappier, J.-M. Cayuela, A. Regnault, M. Garcia-Peydro, H. Dombret, A. Baruchel, M.-L. Toribio, and F. Sigaux
HOXA genes are included in genetic and biologic networks defining human acute T-cell leukemia (T-ALL)
Blood,
July 1, 2005;
106(1):
274 - 286.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
R. Bellucci, E. P. Alyea, S. Chiaretti, C. J. Wu, E. Zorn, E. Weller, B. Wu, C. Canning, R. Schlossman, N. C. Munshi, et al.
Graft-versus-tumor response in patients with multiple myeloma is associated with antibody response to BCMA, a plasma-cell membrane receptor
Blood,
May 15, 2005;
105(10):
3945 - 3950.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
V. Asnafi, A. Buzyn, X. Thomas, F. Huguet, N. Vey, J.-M. Boiron, O. Reman, J.-M. Cayuela, V. Lheritier, J.-P. Vernant, et al.
Impact of TCR status and genotype on outcome in adult T-cell acute lymphoblastic leukemia: a LALA-94 study
Blood,
April 15, 2005;
105(8):
3072 - 3078.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
G. Cario, M. Stanulla, B. M. Fine, O. Teuffel, N. v. Neuhoff, A. Schrauder, T. Flohr, B. W. Schafer, C. R. Bartram, K. Welte, et al.
Distinct gene expression profiles determine molecular treatment response in childhood acute lymphoblastic leukemia
Blood,
January 15, 2005;
105(2):
821 - 826.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
C.-H. Pui, M. Schrappe, R. C. Ribeiro, and C. M. Niemeyer
Childhood and Adolescent Lymphoid and Myeloid Leukemia
Hematology,
January 1, 2004;
2004(1):
118 - 145.
[Abstract]
[Full Text]
[PDF]
|
 |
|
|
|