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Blood, 15 January 2005, Vol. 105, No. 2, pp. 767-774.
Prepublished online as a Blood First Edition Paper on September 28, 2004; DOI 10.1182/blood-2004-03-1046.
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Submitted March 19, 2004
Accepted August 1, 2004
Quantitative analysis of nucleoside transporter and metabolism gene expression in chronic lymphocytic leukemia (CLL)- identification of fludarabine-sensitive and insensitive populations
John R Mackey*, Carlos M Galmarini, Kathryn A Graham, Anil A Joy, Alain Delmer, Laith Dabbaugh, Darryl Glubrecht, Lawrence D Jewell, Raymond Lai, Thack Lang, James D Young, Helene Merle-Beral, Jacques L Binet, Carol E Cass, and Charles Dumontet
Department of Oncology, University of Alberta, Edmonton, Alberta, Canada; Cross Cancer Institute, Edmonton, Alberta, Canada
Unite INSERM 590, Centre Leon Berard, Lyon, France
Hotel Dieu, Paris, France
Cross Cancer Institute, Edmonton, Alberta, Canada
Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada
Hopital de la Pitie Salpetriere, Paris, France
Unite INSERM 590, Centre Leon Berard, Lyon, France; Hopital Edouard Herriot, Lyon, France
* Corresponding author; email: johnmack{at}cancerboard.ab.ca.
Resistance to fludarabine is observed in clinic, and molecular predictive assays for benefit from chemotherapy are required. Our objective was to determine if expression of nucleoside transport and metabolism genes was associated with response to fludarabine therapy in patients with chronic lymphocytic leukemia (CLL). CLL cells from 56 patients were collected prior to treatment with fludarabine. Quantitative RT-PCR was performed on sample RNA to determine the relative levels of mRNA of three nucleoside transporters that mediate fludarabine uptake (human Equilibrative Nucleoside Transporter 1 (hENT1), human Equilibrative Nucleoside Transporter 2 (hENT2), and human Concentrative Nucleoside Transporter 3 (hCNT3)), deoxycytidine kinase (dCK) and three 5'-nucleotidases (ecto-5'nucleotidase (CD73), deoxynucleotidase-1 (dNT-1), and cytoplasmic high Km 5-nucleotidase (CN-II)). Two-dimensional hierarchical cluster analysis of gene expression identified two distinct populations of CLL. Cluster 2 patients experienced a 3.4-fold higher risk of disease progression than cluster 1 patients (p=0.0058, Logrank analysis). Furthermore, independent analysis of the individual genes of interest revealed statistically significant differences for risk of disease progression (adjusted hazard ratios) with under-expression of dNT-1 (HR=0.45 p=0.042), CD73 (HR=0.40, p=0.022), dCK (HR=0.0.48, p=0.035), and over-expression of hCNT3 (HR=4.7, p=0.0007) genes. Subjects with elevated hCNT3 expression experienced a lower complete response rate to fludarabine therapy (11% vs 69%, p =0.002). No hCNT3-mediated plasma membrane nucleoside-transport was detected in CLL samples expressing hCNT3 message, and hCNT3 protein was localized to the cytoplasm with immunohistochemical and confocal microscopy.

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