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Blood, 15 June 2005, Vol. 105, No. 12, pp. 4752-4758.
Prepublished online as a Blood First Edition Paper on February 15, 2005; DOI 10.1182/blood-2004-11-4544.
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Submitted December 2, 2004
Accepted February 3, 2005
Pharmacogenetics of outcome in children with acute lymphoblastic leukemia
Jose C Rocha, Cheng Cheng, Wei Liu, Shinji Kishi, Soma Das, Edwin H Cook, John T Sandlund, Jeffrey Rubnitz, Raul Ribeiro, Dario Campana, Ching-Hon Pui, William E Evans, and Mary V Relling*
Department of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA
Hematologic Malignancies Program, St Jude Children's Research Hospital, Memphis, TN, USA; Department of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN, USA
Department of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN, USA
Department of Psychiatry, Pediatrics, and Human Genetics, University of Chicago, Chicago, IL, USA
Hematologic Malignancies Program, St Jude Children's Research Hospital, Memphis, TN, USA; Department of Hematology-Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA; University of Tennessee, Memphis, TN, USA
Hematologic Malignancies Program, St Jude Children's Research Hospital, Memphis, TN, USA; Department of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA; University of Tennessee, Memphis, TN, USA
* Corresponding author; email: mary.relling{at}stjude.org.
Acquired genetic characteristics of acute lymphoblastic leukemia (ALL) cells are used to individualize therapy, whereas germline genetic characteristics generally are not. We determined whether ALL outcome was related to 16 genetic polymorphisms affecting the pharmacodynamics of antileukemic agents. Of 246 children, 116 were treated on the lower-risk (LR) and 130 on the higher-risk (HR) arms of a St. Jude protocol. Patients in the HR group with the glutathione S-transferase (GSTM1) non-null genotype had greater risk of hematological relapse (P = 0.03), which was further increased by the thymidylate synthetase (TYMS) 3/3 genotype (P = 0.03). These genotypes were also predictive in multivariate analyses (P = 0.0002 and 0.0031, respectively). No genotypes were predictive in the LR arm. Expression of these two genes in ALL blasts was lower in those with low-activity genotypes. For central nervous system relapse, among the HR group, the vitamin D receptor start site (P = 0.02) and intron 8 genotypes (P = 0.04) predisposed, whereas for LR patients the TYMS 3/3 genotype predisposed (P = 0.04). The GSTM1 non-null and TYMS 3/3 genotypes are plausibly linked to drug resistance. Polymorphisms interact to influence antileukemic outcome, and represent determinants of response that can be used to optimize therapy.

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