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Blood, 1 August 2006, Vol. 108, No. 3, pp. 791-801.
Prepublished online as a Blood First Edition Paper on April 18, 2006; DOI 10.1182/blood-2005-11-007799.
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Submitted November 17, 2005
Accepted March 13, 2006
In-depth analysis of the membrane and cytosolic proteome of red blood cells
Erica M Pasini, Morten Kirkegaard, Peter Mortensen, Hans U Lutz, Alan Thomas, and Matthias Mann*
Biomedical Primate Research Centre, Rijswijk, The Netherlands
Center for Experimental Bioinformatics,University of Southern Denmark and Max-Planck Institute
Institute of Biochemistry, Swiss Federal Institute of Technology, Zuerich, Switzerland
Max-Planck Institute for Biochemistry
* Corresponding author; email: mmann{at}biochem.mpg.de.
As well as transport of oxygen and carbon dioxide to and
from the tissues, red blood cells (RBCs) of vertebrates
have a range of other functions attributed to them.
Diseases compromising RBC performance in any of these
functions warrant in depth study. Furthermore the human
RBC is a vital host cell for the malaria parasite. Much
has been learned from classical biochemical approaches
about RBC composition, and membrane organization. Here,
we employ mass spectrometry (MS) based proteomics to
characterize the normal RBC protein profile. The aim of
this study was to obtain the most complete and
informative human RBC proteome possible by combining
high accuracy, high sensitivity protein identification
technology (quadrupole time of flight and Fourier
Transform MS) with selected biochemical procedures for
sample preparation. A total of 340 membrane proteins and
252 soluble proteins were identified, validated and
categorized in terms of sub-cellular localization,
protein family and function. Splice isoforms of proteins
were identified and polypeptides that migrated with
anomalously high or low apparent molecular weights could
be grouped into either ubiquitinylated, partially
degraded and ester-linked complexes. Our data reveals
unexpected complexity of the RBC proteome, provide a
wealth of data on its composition, sheds light on
several open issues in RBC biology and is a departure
point for comprehensive understanding of RBC functions.

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