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Blood, 1 March 2008, Vol. 111, No. 5, pp. 2887-2895.
Prepublished online as a Blood First Edition Paper on November 16, 2007; DOI 10.1182/blood-2007-03-079921.
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Submitted March 15, 2007
Accepted November 5, 2007
Chromatin modifications induced by PML-RAR repress critical targets in leukemogenesis as analyzed by ChIP-Chip
Claudia Hoemme, Abdul Peerzada, Gerhard Behre, Yipeng Wang, Michael McClelland, Kay Nieselt, Matthias Zschunke, Christine Disselhoff, Shuchi Agrawal, Fabienne Isken, Nicola Tidow, Wolfgang E. Berdel, Hubert Serve, and Carsten Muller-Tidow*
Department of Medicine, Hematology and Oncology, and Interdisciplinary Center for Clinical Research (IZKF), University of Munster, Munster, Germany
Department of Oncology and Hematology, University of Halle, Halle, Germany
Sidney Kimmel Cancer Center, San Diego, CA, United States
Bioinformatics Institute, University of Tubingen, Tubingen, Germany
* Corresponding author; email: muellerc{at}uni-muenster.de.
The translocation t(15;17) generates the chimeric PML-RAR transcription factor that is the initiating event of acute promyelocytic leukemia. A global view of PML-RAR transcriptional functions was obtained by genome-wide binding and chromatin modification analyses, combined with genome wide expression data. ChIP-chip experiments identified 372 direct genomic PML-RAR targets. A subset of these was confirmed in primary acute promyelocytic leukemia. Direct PML-RAR targets include regulators of global transcriptional programs as well as critical regulatory genes for basic cellular functions such as cell cycle control and apoptosis. PML-RAR binding universally led to HDAC1 recruitment, loss of histone H3 acetylation, increased tri-methylation of histone H3 lysine 9 and unexpectedly increased tri-methylation of histone H3 lysine 4. The binding of PML-RAR to target promoters and the resulting histone modifications resulted in mRNA repression of functionally relevant genes. Taken together our results reveal that the transcription factor PML-RAR regulates key cancer related genes and pathways by inducing a repressed chromatin formation on its direct genomic target genes.

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